Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39910 107 / 1e-27 Pectin lyase-like superfamily protein (.1) AT5G27530 100 / 1e-24 Pectin lyase-like superfamily protein (.1) AT4G35670 98 / 7e-24 Pectin lyase-like superfamily protein (.1) AT5G14650 94 / 2e-22 Pectin lyase-like superfamily protein (.1) AT3G15720 94 / 3e-22 Pectin lyase-like superfamily protein (.1.2) AT5G44840 90 / 5e-21 Pectin lyase-like superfamily protein (.1) AT5G17200 87 / 1e-19 Pectin lyase-like superfamily protein (.1) AT1G78400 86 / 2e-19 Pectin lyase-like superfamily protein (.1) AT1G60590 86 / 2e-19 Pectin lyase-like superfamily protein (.1) AT1G05650 81 / 8e-18 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040610 [exp] 184 / 7e-56 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10002727 [exp] 124 / 2e-33 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10016940 [exp] 107 / 4e-27 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 87 / 5e-20 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10036035 [exp] 86 / 1e-19 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10002124 [exp] 84 / 7e-19 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 82 / 4e-18 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014826 [exp] 82 / 5e-18 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 81 / 1e-17 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252900 [exp] 105 / 1e-26 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.012G119700 [exp] 104 / 4e-26 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.018G028700 [exp] 100 / 2e-24 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 97 / 2e-23 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 91 / 3e-21 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 90 / 9e-21 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 85 / 4e-19 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 84 / 1e-18 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 81 / 1e-17 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.007G144500 [exp] 80 / 1e-17 AT3G59850 493 / 3e-175 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10040605 pacid=23157671 polypeptide=Lus10040605 locus=Lus10040605.g ID=Lus10040605.BGIv1.0 annot-version=v1.0 ATGGCGGGTCTAGTAGCACTAATCGCCAACCTTCTGGTTCTCTTACTGACCTCTCAAGCTTGCCTCTCCTATCGTCCCTTGGAAGAAAACAACCATTACT ATGGAACAATGGACGATGCCAGAAGGTACATCGACGGCTTTCTCGACTACTTAGCATCCGCTAGAGACGACAGCCGGTTGATGACTTCGACACCAAGCCA TATTCGTGACGAAACTTTCGGCTATGGCTCCGCTGGAAGCTTCAACGTGCTCGATTATGGCGCTGTTGGAGACGGCCGCACTGATTCGTCCGCTGCTTTC TCGAAAGCATGGGGTGATTTCTGTGGAGCGAGTGGACAACCGACTCTGATTATACCTTCCGGTAATGTGTTCTTGCTCAACCCAATTTCTTTCACGGGTC CTTGCAATTCTCAGAAGCTTCGAATTCAGTTGCAAGGGACACTCCTGGCACCATCGAGCATCAACGCTTGGAGAAACAGCAAAGACGATTGGATTCAATT CTCTTACGTGAATGGTCTAACAATCAACGGCGGAGGTAAAATCGACGGTAGGGATGGCATTCGGGTACATCGGGTCCGAATATATATCCCCCGAAACCCG GCCCGTAACCTATCCGGGTATTGGAATTCATGCCCGGATTATCAGAACGGGTAA
AA sequence Show only first row Show all	>Lus10040605 pacid=23157671 polypeptide=Lus10040605 locus=Lus10040605.g ID=Lus10040605.BGIv1.0 annot-version=v1.0 MAGLVALIANLLVLLLTSQACLSYRPLEENNHYYGTMDDARRYIDGFLDYLASARDDSRLMTSTPSHIRDETFGYGSAGSFNVLDYGAVGDGRTDSSAAF SKAWGDFCGASGQPTLIIPSGNVFLLNPISFTGPCNSQKLRIQLQGTLLAPSSINAWRNSKDDWIQFSYVNGLTINGGGKIDGRDGIRVHRVRIYIPRNP ARNLSGYWNSCPDYQNG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39910			Pectin lyase-like superfamily ...		Lus10040605 [exp]	0	1

Compare expression of checked genes

Lus10040605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.