Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33920 87 / 9e-22 ATPP2-A4 phloem protein 2-A4 (.1) AT1G65390 89 / 9e-21 ATPP2-A5 phloem protein 2 A5 (.1.2) AT4G19840 76 / 8e-17 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT1G09155 72 / 5e-15 ATPP2-B15 phloem protein 2-B15 (.1) AT5G45070 69 / 7e-14 ATPP2-A8 phloem protein 2-A8 (.1) AT5G24560 67 / 3e-13 ATPP2-B12 phloem protein 2-B12 (.1) AT4G19850 64 / 7e-13 PP2A2, ATPP2-A2 ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A2, lectin-related (.1.2) AT2G02360 64 / 4e-12 ATPP2-B10 phloem protein 2-B10 (.1) AT2G26820 63 / 1e-11 ATPP2-A3 phloem protein 2-A3 (.1) AT5G45080 63 / 1e-11 ATPP2-A6 phloem protein 2-A6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018301 [exp] 357 / 2e-127 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10018303 [exp] 339 / 3e-120 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10040603 [exp] 321 / 4e-113 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10018304 [exp] 86 / 1e-19 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10040602 [exp] 82 / 4e-18 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10018171 [exp] 76 / 2e-16 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10029674 [exp] 73 / 3e-15 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10042713 [exp] 71 / 1e-14 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10025666 [exp] 71 / 1e-14 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G120300 [exp] 206 / 2e-67 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.012G120400 [exp] 82 / 6e-19 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1) Potri.005G022000 [exp] 67 / 3e-13 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 63 / 7e-12 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.015G120200 [exp] 61 / 1e-11 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1) Potri.006G267000 [exp] 62 / 3e-11 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.001G050100 [exp] 60 / 6e-11 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.006G266900 [exp] 59 / 1e-10 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 59 / 2e-10 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 59 / 3e-10 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040606 pacid=23157581 polypeptide=Lus10040606 locus=Lus10040606.g ID=Lus10040606.BGIv1.0 annot-version=v1.0 ATGGGTCAGATTCAAGAATACAACAGAAACGACATGTCCAGCCGATCCTCTTCCCCTCATTGGAAGCCTGCTGATGGAGGCTACACCTTGATATCCCATG ACCCAAATCTTCAAGGAGGGTACAGGATCCCCGCCAGAGCTCTCAACATAGTCTGGGGGAACGACCCTCGTTACTGGCAATGGATCCCACCCTCCGATCG CGACAAGAGTGCAAGTGGGTTTAAGGACATGGGAGCAATGTTGGTTCAGGTGAACTGGATTCAGGTGACCGGGAGGCTGCCGACGAGTTGGTTGACGGGA AGTAGGAAGTATGAGGTAGTATGGGTGGTGAAGTTCAGGGTGGATGCGTTCGGGTGGCACTCTGTTCCAATCAAGTTCAAGGTGGAGGATGGGAACGGAG AAGAGAAGGTGAAGAGAGTGGTTGTGGAGCCGTACAGGCAGAAGCACGGCGTGTGGCACGAGATCTCCGGCGGCGAGTTCACGGCGGCGGCCGGGAGAGG AGAGATGGTGGAGTTTGGGATGTATGAAGTTGATAGCGAGTGGTGGAAAGGTAGCATGGTGATTGCAGGGGTCAAGATTATCCCCAAATCTTGA
AA sequence Show only first row Show all	>Lus10040606 pacid=23157581 polypeptide=Lus10040606 locus=Lus10040606.g ID=Lus10040606.BGIv1.0 annot-version=v1.0 MGQIQEYNRNDMSSRSSSPHWKPADGGYTLISHDPNLQGGYRIPARALNIVWGNDPRYWQWIPPSDRDKSASGFKDMGAMLVQVNWIQVTGRLPTSWLTG SRKYEVVWVVKFRVDAFGWHSVPIKFKVEDGNGEEKVKRVVVEPYRQKHGVWHEISGGEFTAAAGRGEMVEFGMYEVDSEWWKGSMVIAGVKIIPKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	0	1
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	2.2	0.8785
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	2.4	0.8496
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	6.3	0.8242
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	7.5	0.8259
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	8.5	0.7676
					Lus10029758 [exp]	8.9	0.7760
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	9.7	0.8157
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	13.5	0.7600
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	14.5	0.7853
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	15.5	0.7916

Compare expression of checked genes

Lus10040606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.