Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39440 164 / 1e-49 unknown protein AT1G31200 117 / 2e-31 ATPP2-A9 phloem protein 2-A9 (.1) AT1G10155 113 / 6e-30 ATPP2-A10 phloem protein 2-A10 (.1) AT4G19840 52 / 1e-07 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018300 [exp] 702 / 0 AT2G39440 164 / 7e-50 unknown protein Lus10018301 [exp] 56 / 7e-09 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10018303 [exp] 55 / 1e-08 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10040603 [exp] 55 / 1e-08 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10040606 [exp] 52 / 1e-07 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10029674 [exp] 47 / 1e-05 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10018304 [exp] 45 / 5e-05 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120220 [exp] 183 / 3e-57 AT2G39440 183 / 5e-60 unknown protein Potri.012G120100 [exp] 179 / 1e-55 AT2G39440 183 / 5e-60 unknown protein Potri.015G120200 [exp] 160 / 2e-48 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1) Potri.012G120340 [exp] 154 / 5e-46 AT1G10155 133 / 1e-39 phloem protein 2-A10 (.1) Potri.012G120160 [exp] 135 / 2e-38 AT1G10155 120 / 1e-34 phloem protein 2-A10 (.1) Potri.012G120280 [exp] 130 / 6e-37 AT1G10155 125 / 1e-36 phloem protein 2-A10 (.1) Potri.015G120100 [exp] 120 / 5e-33 AT1G10155 122 / 2e-35 phloem protein 2-A10 (.1) Potri.015G118900 [exp] 119 / 1e-31 AT1G10155 103 / 5e-27 phloem protein 2-A10 (.1) Potri.015G118800 [exp] 106 / 2e-26 AT1G10155 86 / 4e-20 phloem protein 2-A10 (.1) Potri.015G120000 [exp] 100 / 2e-24 AT1G10155 82 / 6e-19 phloem protein 2-A10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF08615 [flax] [poplar] RNase_H2_suC Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
Representative CDS sequence Show only first row Show all	>Lus10040607 pacid=23157593 polypeptide=Lus10040607 locus=Lus10040607.g ID=Lus10040607.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGAGGAATATGGCCGGAGCAATAAACTTGACGGATCAGCAAGGGGCGCAATCTTCCGTCGCAGACCTTACCGGCGCCGTCCACAATCTAC CGTGCTGCATCAAATACGACGGCCCTTCCGACGTTTCCGACTACTTCAAACCAAAACCCGCCGGGTTAGAAGTCGATGGACTGGCTGTGCAGCAAGCGTA TTTCAGGGGTAGGAACCTACAAGGGGCCACGATTCCTATCCCGCAAGGCTATTCTGGATTTGTATTGGGAAAGAGAAGTCTTGGCAACAAAAGGAAAGGT TCCGAATGCAACTCTAATTGTTGGGAGTCGACTGCTAAGTTTGAGAAGATAACCTATTGGAATCACGACACTCTACCTTCACAAGATGATACGTTTATTC GCTCCCTCCATTGGTTGCCTGTTGCAGAAGCAGATGAGAATTCCTTCAAATATATAAAAATAGGCAAAGAGAAGGCTGGATCAGTAAAGCATCTGGCATT AACCAAGTTCTCTGCTTTCAACATGAACACAAAGCCACATCAAGAGGGAGATCCAAAGGAAGTGGTTTTCTCCGAGACTCCAAAATCATGGTGGTTTAAG CCCAAGGCATTCAGCATCGTATGGGGCAATGATGATCGCTACTGGCGTATTCCCAAGGATGGAGGACCGACAGAGCTGTTGCAGGTCAGTTGGCTCGAAG TAAGCAGCATCAACGCATTGGATGGCAACATAGAACCAGGGAAGAAGTATGCAATTTCATTCCGGTTGCAGATGAAGCAAGGGGCTTTCGGTTGGAACGG GTGTTCCGTTTACGTGATGACCAAGGTAGGCCAGAGTGGGAAGTACACAGCTAAGAAGATAAAGCTGGCAGATCAGCCGGAGATGGATAAAGAGTTCGAT ACGGAGAAGCTTGAGATAATTGTCCCGGCCGATGCCACTGATAATAGGCTTTACTTCGGATTGTACGAAGTTTGGACTGGAAGATGGAAGGGTGGTCTGC TCATCCATGGTGCTACCGTTGAAGATATCACAGACCAGTGA
AA sequence Show only first row Show all	>Lus10040607 pacid=23157593 polypeptide=Lus10040607 locus=Lus10040607.g ID=Lus10040607.BGIv1.0 annot-version=v1.0 MEEGRNMAGAINLTDQQGAQSSVADLTGAVHNLPCCIKYDGPSDVSDYFKPKPAGLEVDGLAVQQAYFRGRNLQGATIPIPQGYSGFVLGKRSLGNKRKG SECNSNCWESTAKFEKITYWNHDTLPSQDDTFIRSLHWLPVAEADENSFKYIKIGKEKAGSVKHLALTKFSAFNMNTKPHQEGDPKEVVFSETPKSWWFK PKAFSIVWGNDDRYWRIPKDGGPTELLQVSWLEVSSINALDGNIEPGKKYAISFRLQMKQGAFGWNGCSVYVMTKVGQSGKYTAKKIKLADQPEMDKEFD TEKLEIIVPADATDNRLYFGLYEVWTGRWKGGLLIHGATVEDITDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39440			unknown protein		Lus10040607 [exp]	0	1
AT5G21910			unknown protein		Lus10038069 [exp]	1.0	0.9682
AT2G39440			unknown protein		Lus10018300 [exp]	1.4	0.9660
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	2.0	0.9454
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	3.7	0.9408
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	4.2	0.9411
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	4.2	0.9621
AT1G27990			unknown protein		Lus10015763 [exp]	4.5	0.9351
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10009833 [exp]	5.3	0.9290
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	5.7	0.9333
AT5G37730			unknown protein		Lus10033584 [exp]	6.0	0.9362

Compare expression of checked genes

Lus10040607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.