Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39170 180 / 2e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018298 [exp] 416 / 3e-149 AT2G39170 163 / 6e-50 unknown protein Lus10028816 [exp] 293 / 3e-100 AT2G39170 176 / 1e-54 unknown protein Lus10017465 [exp] 281 / 2e-95 AT2G39170 177 / 3e-55 unknown protein Lus10037961 [exp] 156 / 5e-48 AT2G39170 98 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227400 [exp] 247 / 4e-82 AT2G39170 214 / 2e-69 unknown protein Potri.008G035000 [exp] 240 / 6e-79 AT2G39170 196 / 1e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10167 [flax] [poplar] BORCS8 BLOC-1-related complex sub-unit 8
Representative CDS sequence Show only first row Show all	>Lus10040608 pacid=23157695 polypeptide=Lus10040608 locus=Lus10040608.g ID=Lus10040608.BGIv1.0 annot-version=v1.0 ATGGATGGATTCTCCACTGTAGATGGATTTGTGGAGATAACTGAATGCATGGCTGAAATGATGAAGTATGTGGCAAATGAACCCTCTGTGGGGCTTTTCT ACGTCCAGCAGCATGTGCAAAATGCAGCTCCGAATGTCATCACCATCAAGAACAGTGTGGCGGATAGGTCCCGTGATACAAGCTTGAGCACTCAAGACTT GGAGGATTCTATTACCACGGTGAGATCGATGAAAGAATGCGGGCTGCCCATTGCAAATGAGATGATCAAAGACATTAGAAAATCTGTAGCAGTAATGTCT GAAAAAAAGCAGCCAAGAAGAGGATTAGGTCGTAGGTCATCTTCCGAGTTTCTGATGAGACGATCCAGCTCATTCGAACCGCCTATTCGGGGGGACAGCC ACGATCCTGTTGCCAAAAAGTCAGGTTACTATTTCTCCAGCATGTTTAAGACTGCAAAGGAAAGAGCCAGCGGTTTAAAGTGGCCGCCAATTGATCTCAA GGATACAATACCAAGTCTTAGCCCACCGCAGTTTATCGAATCCAGAAGTACAAGTTCTTCTGCAGCTGTTGCTGAAGCTGACGAGTTGCCTTTGTCAAGC CAGACAGCTGAGGACACTGCTGACGAGCTCCAAACAGAGACAAAAGATGAGCAGTTGGGTGTGATCGAAACAAAAGACTATGATGTGTTTAAGGCTGATA AGCAAGCCAAACTAGAGGAATGGCTGCTCGAAACAGCTGGTACTGGAGACTAA
AA sequence Show only first row Show all	>Lus10040608 pacid=23157695 polypeptide=Lus10040608 locus=Lus10040608.g ID=Lus10040608.BGIv1.0 annot-version=v1.0 MDGFSTVDGFVEITECMAEMMKYVANEPSVGLFYVQQHVQNAAPNVITIKNSVADRSRDTSLSTQDLEDSITTVRSMKECGLPIANEMIKDIRKSVAVMS EKKQPRRGLGRRSSSEFLMRRSSSFEPPIRGDSHDPVAKKSGYYFSSMFKTAKERASGLKWPPIDLKDTIPSLSPPQFIESRSTSSSAAVAEADELPLSS QTAEDTADELQTETKDEQLGVIETKDYDVFKADKQAKLEEWLLETAGTGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39170			unknown protein		Lus10040608 [exp]	0	1
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	2.2	0.8782
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	2.4	0.8564
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	3.5	0.8557
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	3.7	0.8220
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	4.0	0.8313
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10004744 [exp]	6.2	0.7602
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	6.6	0.8035
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	7.1	0.8111
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	7.1	0.8283
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	8.0	0.8218

Compare expression of checked genes

Lus10040608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.