Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10180 760 / 0 unknown protein AT1G10385 316 / 2e-96 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT5G49830 308 / 1e-93 EXO84B exocyst complex component 84B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018297 [exp] 1313 / 0 AT1G10180 858 / 0.0 unknown protein Lus10034843 [exp] 320 / 1e-97 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 311 / 2e-94 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 310 / 3e-94 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 299 / 6e-90 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 282 / 2e-83 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 227 / 5e-64 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10022896 [exp] 186 / 8e-49 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 160 / 7e-41 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118500 [exp] 949 / 0 AT1G10180 788 / 0.0 unknown protein Potri.012G120000 [exp] 940 / 0 AT1G10180 809 / 0.0 unknown protein Potri.015G119300 [exp] 723 / 0 AT1G10180 628 / 0.0 unknown protein Potri.016G063700 [exp] 332 / 2e-102 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.008G009100 [exp] 305 / 3e-92 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.010G249900 [exp] 303 / 2e-91 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.014G195400 [exp] 190 / 2e-50 AT1G10180 215 / 8e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040609 pacid=23157697 polypeptide=Lus10040609 locus=Lus10040609.g ID=Lus10040609.BGIv1.0 annot-version=v1.0 ATGGAGAGCAGCGAAGAAGAAGACGATTTCCCATCCATCGAAACCATCACTCCCCAATCCAAGATCGACTCCCTCTACCAATCCCACACTGAAAAGGGTA TCCGGAAGCTTTGTTGTGAGCTCTTGGATTTGAAGGATGCAGCGGAAAATATGTGTGGCAATATGCAAACCAAATACTTGGCTTTCTTGAGAATGTCTGA TGAAGTAGTGGAAATGGAGCACGAATTGGTCGAACTGAGAAAGCATATTTCTGCTCAGGGGATTCTTGTACAGGATTTGATGACAGGTGTGGCCCGTGAA TTACAAGAATGGAAGGCTGTTGATGGTGACAATGCTGATTCTCAGCAAGATCCGCCGATCGATGAACTCCAAGACATGTTATCACCCGAAGCAGACAATC ATCAGGGGCTTTTTCTGGAGAATGTTGATATTCTTTTGGCTGAACATAAAGTCGAAGAAGCTTTGGAGGCTATAATTTCCGAAGAGAGAAATTCACTAGA AGAATCAACATATAAGCAGGCTTTTCAGAAGAGAAAGTCGATGCTTGTCGAGCAGCTAACTGAGATTGTTCAACATCCATCAGCTAAAGTTGCAGAGATA AAGAAATCATTAGCTGCCTTAATCAAACTTGGGAAAGGTCCTCTGGCACATCAAATGCTTCTAGATTTATACCGGTCTCGTCTACTCAAGAACATTGAGG TTTTCCTTCCTTCATGTTCAGTGTGCCCCAAAACCTTTCCTGCCACACTTTGTAAGCTTGTTTTCTCATCTATCTCGTCTGCTACGAAAGAATCTATCCT GATTTTCGGTGATGATCCCGTGTATACTAATAGAGTTGTTCAGTCTGCTGAGTGGGAGATCGAATCGTTTGTGCGGTTGGTGAAGGATAATGCTCCTTCT CCAGACACTGTTTCAGCTTTGGGTGCTGCCAGTAACTATATTCAAGCTAGTCTTGCTTACTGTTCGATGTTGGAGCCTCAGGGTCTTAAATTGTCGAAGC TGCTTCTCGTTCTCTTGCGCCCATACATTGAGGAAGTCTTGGAGTTGAATTTTAGACGTGCAAGAAAGCTACTTCTTGATGCATCGGAACTTGATGAAAG CTCCTTACTATCAGCTCACCTGTCGTCACCATTATCGGCTTTCGTAGCATCCTCAGATATTATGCTTGTTGACAGTGGGATAAGGTTTATGGACATAACG GAGGTATTACTTGGACAGTTGACCCCTCCAGTAGTCATGAATTTCGGAGGAAGTGTGTTAATGAGAATCTCACAACTATTTGACAAATACATGGACGTAC TTATCAAATCTCTGCCGGGACCATCTGATGATGACAACCTAACAGACCTGAAGGAAGTCGTACACTTCAGGACCGAGACAGACGAAGAACAACTTTCGCT CTTGGGAATGGCATTCACTATCCTTGATGAACTCTTACCTCATGCTGTGAAAACAGTGTGGAGTCTCAAGAAAGAAGGGAAGGAATCTACCAAAGACGAA TCGTCTCCACCTTCTGCTAGCATTCCCGGGGAGTTGAAGGACTGGAAGCGACAACTGCAGCATTCATTCGATAAGCTTAAGGATCATTTCTGCCGACAAT ATGTTCTCAGCTTTATCTATTCCACAGAAGGCAAAACTCGACTTAACGCCCAAATCTATTTAGACGGTGATGGAGATGATTTAGTTAATAACCCTGAACC TCTGCCTTCATTGCCGTTTCAGGCATTGTTTGCAAAGCTGCAGCAGTTTGCAACTGTGGCTGGAGATGTGCTACTGGGAAGAGAGAAAATACAGAAGCTA TTGCTGGCCAGATTGACCGAAACCGTTGTTATGTGGTTGTCGGATGAACAGGAGTTTTGGGGCGTATTCGAGGATAAGTCTGTCCCAATTAAACCGTTAG GATTGCAACAGCTGCTTCTTGATATGCATTTCACGGTGGAACTTGCACGGTTTGCTGGTTATCCATCCCGGCAAGTCCACCAAATAGCCTCCGCAATTAT TGCTCGAGCCATCCGGACTTTCACAGCTCGAGGAATAGATCCACAAAGTGCACTACCGGAGGACGAATGGTTTGTTGAGACGGCAAAGTCGGCCATCAAC AAACTCTTGGCTGGATCCGAGTCCGAGGAGGAAGTGTTGGACGATGGACACATAATTTCTCACGGGGATAGCGTCACGGATTCAGACGACGACACTGCCT CTTCCCTTTCGTCTGTAGAATCTTCCGAGTCCTTTGTATCGGCAACCATGGATGCTATTGACAGCCCCGGAGAGTTAACTGATTAG
AA sequence Show only first row Show all	>Lus10040609 pacid=23157697 polypeptide=Lus10040609 locus=Lus10040609.g ID=Lus10040609.BGIv1.0 annot-version=v1.0 MESSEEEDDFPSIETITPQSKIDSLYQSHTEKGIRKLCCELLDLKDAAENMCGNMQTKYLAFLRMSDEVVEMEHELVELRKHISAQGILVQDLMTGVARE LQEWKAVDGDNADSQQDPPIDELQDMLSPEADNHQGLFLENVDILLAEHKVEEALEAIISEERNSLEESTYKQAFQKRKSMLVEQLTEIVQHPSAKVAEI KKSLAALIKLGKGPLAHQMLLDLYRSRLLKNIEVFLPSCSVCPKTFPATLCKLVFSSISSATKESILIFGDDPVYTNRVVQSAEWEIESFVRLVKDNAPS PDTVSALGAASNYIQASLAYCSMLEPQGLKLSKLLLVLLRPYIEEVLELNFRRARKLLLDASELDESSLLSAHLSSPLSAFVASSDIMLVDSGIRFMDIT EVLLGQLTPPVVMNFGGSVLMRISQLFDKYMDVLIKSLPGPSDDDNLTDLKEVVHFRTETDEEQLSLLGMAFTILDELLPHAVKTVWSLKKEGKESTKDE SSPPSASIPGELKDWKRQLQHSFDKLKDHFCRQYVLSFIYSTEGKTRLNAQIYLDGDGDDLVNNPEPLPSLPFQALFAKLQQFATVAGDVLLGREKIQKL LLARLTETVVMWLSDEQEFWGVFEDKSVPIKPLGLQQLLLDMHFTVELARFAGYPSRQVHQIASAIIARAIRTFTARGIDPQSALPEDEWFVETAKSAIN KLLAGSESEEEVLDDGHIISHGDSVTDSDDDTASSLSSVESSESFVSATMDAIDSPGELTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10180			unknown protein		Lus10040609 [exp]	0	1
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	3.9	0.9355
AT1G73450			Protein kinase superfamily pro...		Lus10031902 [exp]	7.3	0.8889
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019275 [exp]	8.3	0.9025
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10016761 [exp]	9.2	0.8486
AT4G31880			unknown protein		Lus10017121 [exp]	11.0	0.9019
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	12.5	0.8994
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	12.9	0.9108
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	14.1	0.9013
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	16.0	0.8889
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	20.0	0.8846

Compare expression of checked genes

Lus10040609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.