Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17200 317 / 3e-104 Pectin lyase-like superfamily protein (.1) AT4G35670 308 / 3e-101 Pectin lyase-like superfamily protein (.1) AT5G27530 307 / 4e-100 Pectin lyase-like superfamily protein (.1) AT3G15720 305 / 2e-99 Pectin lyase-like superfamily protein (.1.2) AT5G44840 290 / 2e-94 Pectin lyase-like superfamily protein (.1) AT5G44830 267 / 3e-86 Pectin lyase-like superfamily protein (.1) AT3G07970 244 / 8e-76 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT1G05660 242 / 1e-75 Pectin lyase-like superfamily protein (.1) AT1G80170 242 / 3e-75 Pectin lyase-like superfamily protein (.1) AT3G57510 241 / 1e-74 ADPG1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002727 [exp] 374 / 4e-127 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10040604 [exp] 365 / 2e-124 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2) Lus10016940 [exp] 362 / 1e-121 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10018302 [exp] 352 / 2e-120 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1) Lus10014826 [exp] 346 / 1e-114 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 342 / 4e-114 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10036035 [exp] 292 / 2e-95 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10029511 [exp] 257 / 2e-80 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 239 / 7e-75 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119700 [exp] 372 / 3e-126 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.018G028700 [exp] 340 / 4e-113 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.006G252900 [exp] 290 / 2e-94 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 253 / 1e-79 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 253 / 3e-79 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 250 / 4e-78 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 242 / 5e-75 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 236 / 2e-72 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 233 / 5e-72 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 232 / 1e-70 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10040610 pacid=23157939 polypeptide=Lus10040610 locus=Lus10040610.g ID=Lus10040610.BGIv1.0 annot-version=v1.0 ATGGCGGGTCTCAGACTAATCTGCACCATGCTGGTTCTCTTTCTGATGCTTCATTCTCGCCTCAGCTACGGCCGTCCCCTTCGAGATTATAACAATTACG ACAGATCGATTAACATCGACAATGCTAGACGATACATCAATGGATTTCTAGACTACCTTGCAGCAACTACAAATAGCGTGACGACCGATGATGATCATCA TGAAACCTTCGGCTATGTCCCTCGACAGCAAGCTAGTAGTGGACGCTTCAACGTGCTCGATTATGGCGCTGTTGCAGACGGCTACACTGATTCCGCCAAT GCTTTCTTGAAAGCATGGGACGATTTCTGTGAAGAGAGTGGGCATCCGACTCTCGTTATACCTTCCGGCAAGGTGTTCCTGCTCACACCGGTTACTTTTC AGGGTCCTTGCAAGTCTCCGAAGCTTCAAATTGAGTTGCAAGGGACGATCATCGCACCGGGAAGCGTCAAGGCATGGACGAATAACAAAGACACATGGAT ACAATTCGATTACGTGAATGGCCTAACTATCACCGGCGGTGGTACAATCGACGGCCAGGGTCAGATCTGGTGGGACCAATGCCAAAAGTATAAGAGCTGC ACACGACCAACGGCTCTGAGTTTCCACAGCTGCAACGAGCTCGTCCTGAATGCGATACACCACGTCAACAGCCAGAGGAACCACATTAGCATAGATGATT GCAACGCCGTGGAGATCTCTCACCTAACGATCACCGCGCCCGAAAACAGCCCCAACACCGACGGAATCGATATCGCTGCCTCCTCGTACCTCAACATCCA CGACTCCTTCATCGGAACAGGGGACGACTGCATTGCAATCAACGCTTTCACTTCGCACGTAAACATCTCCCGCCTCACGTGTGGTCCCGGCCACGGGATC AGCATCGGCAGCTTGGGTAAAAACGGAGCTTACGAGACCGTGGAGGACGTCCACGTCGTGAATTGCACTTTTGAGAACACCATGTTCGGTGCCAGAATCA AGACTTGGGAGGGAGGCAGAGGGTACGCGAGGAGAGTGAGTTTCAAGGATATTATATTGGTCAATGCCGGGAATCCGATCATAATCGACCAGGCGTATAT GGACACACATGAGGGGTTGTCGAGAGGGCACTCTACGTTGTTGTCGGGGGATCACGTAGAGATAAGCGACGTGACATACAAGGGAGTGGTGGGGACATGT TCCGACGAGAGGGCAGTGTATTTGAACTGCGCCGGGTGCAAGGACATTCATGTGGAGAATGTGCAGATCGCACCTGCTGTGGCAGGGAAGCAATTGTTTG CGGCTTGTAACAATGCTCATGGGCGTTCGAGAGATGATCTTTCACCGAAGGTCTCTTGCCTTATGCCATGA
AA sequence Show only first row Show all	>Lus10040610 pacid=23157939 polypeptide=Lus10040610 locus=Lus10040610.g ID=Lus10040610.BGIv1.0 annot-version=v1.0 MAGLRLICTMLVLFLMLHSRLSYGRPLRDYNNYDRSINIDNARRYINGFLDYLAATTNSVTTDDDHHETFGYVPRQQASSGRFNVLDYGAVADGYTDSAN AFLKAWDDFCEESGHPTLVIPSGKVFLLTPVTFQGPCKSPKLQIELQGTIIAPGSVKAWTNNKDTWIQFDYVNGLTITGGGTIDGQGQIWWDQCQKYKSC TRPTALSFHSCNELVLNAIHHVNSQRNHISIDDCNAVEISHLTITAPENSPNTDGIDIAASSYLNIHDSFIGTGDDCIAINAFTSHVNISRLTCGPGHGI SIGSLGKNGAYETVEDVHVVNCTFENTMFGARIKTWEGGRGYARRVSFKDIILVNAGNPIIIDQAYMDTHEGLSRGHSTLLSGDHVEISDVTYKGVVGTC SDERAVYLNCAGCKDIHVENVQIAPAVAGKQLFAACNNAHGRSRDDLSPKVSCLMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17200			Pectin lyase-like superfamily ...		Lus10040610 [exp]	0	1

Compare expression of checked genes

Lus10040610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.