Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33120 331 / 1e-116 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04750 331 / 2e-116 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 330 / 3e-116 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 330 / 2e-115 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT4G15780 273 / 2e-93 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT3G54300 270 / 4e-92 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G33110 260 / 1e-88 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT5G11150 147 / 4e-44 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 144 / 9e-43 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 139 / 5e-41 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018296 [exp] 395 / 1e-141 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 389 / 2e-139 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 387 / 1e-138 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 336 / 2e-118 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 333 / 3e-117 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 332 / 6e-117 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 328 / 2e-115 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 320 / 3e-112 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 274 / 4e-94 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119600 [exp] 364 / 1e-129 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 362 / 6e-129 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 339 / 1e-119 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 324 / 6e-114 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 320 / 2e-112 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 271 / 9e-93 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.008G019400 [exp] 266 / 1e-90 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 265 / 4e-90 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 145 / 4e-43 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.018G025800 [exp] 141 / 1e-41 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10040611 pacid=23157839 polypeptide=Lus10040611 locus=Lus10040611.g ID=Lus10040611.BGIv1.0 annot-version=v1.0 ATGGGACAGAAACCGCTCATCTACGCCTTCGTCGCCCGCGGAACCGTCGTTCTAGCTGAGTACACCGAATTCAGCGGCAATTTCAACTCCATCGCCTTCC AGTGCCTCCAGAAACTGCCTGCCGCCAATAATAAGTTCACTTACAACTGCGACGGCCACACTTTCAATTACCTCGTTGATAATGGCTACACATACTGTGT GGTAGCTGATGAATCTGCTGGAAGGCAGGTGCCGATGGCTTTTCTGGAGCGTATCAAGGAAAATTTCATGACGAAATATGGTGGTGGAAAGGCTACAACA GCAACTGCTAACAGCCTGAACAAAGAATTTGGCCCAAAGTTGAAAGAGCATATGCAATACTGCGTGGACCATCCTGAAGAGATAAGCAAGCTGGCAAAGG TTAAAGCTCAGGTTTCAGAAGTCAAAGGAGTTATGATGGAGAACATCGAAAAGGTTTTGGACAGGGGAGAAAAGATAGAACTACTGGTGGACAAAACTGA GAACCTCCATCAGCAGGCACAAGATTTCAGATCGACCGGAACGAAGATCAGGAGAAAGATGTGGCTGCAGAATATGAAGATCAAGCTCATCGTCTTGGGG ATACTCGCTGCTCTGATCCTCATCATTGTACTCTCGGTTTGCAAAGGTTTCAACTGCGGGAAAAACTGA
AA sequence Show only first row Show all	>Lus10040611 pacid=23157839 polypeptide=Lus10040611 locus=Lus10040611.g ID=Lus10040611.BGIv1.0 annot-version=v1.0 MGQKPLIYAFVARGTVVLAEYTEFSGNFNSIAFQCLQKLPAANNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVPMAFLERIKENFMTKYGGGKATT ATANSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKIRRKMWLQNMKIKLIVLG ILAALILIIVLSVCKGFNCGKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10040611 [exp]	0	1
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10020106 [exp]	2.2	0.7763
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019502 [exp]	4.5	0.7573
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	7.1	0.7691
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	10.5	0.7506
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	19.4	0.7576
AT1G71780			unknown protein		Lus10040812 [exp]	23.3	0.7454
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	23.8	0.7453
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	26.6	0.7461
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10036532 [exp]	30.7	0.6959
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	33.0	0.7467

Compare expression of checked genes

Lus10040611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.