Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34340 103 / 9e-26 TAF8 TBP-associated factor 8 (.1) AT1G31240 100 / 2e-25 Bromodomain transcription factor (.1) AT5G15570 99 / 7e-24 Bromodomain transcription factor (.1) AT3G02160 92 / 2e-21 Bromodomain transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018295 [exp] 293 / 1e-100 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1) Lus10026530 [exp] 106 / 1e-26 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1) Lus10013818 [exp] 103 / 9e-26 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118200 [exp] 146 / 7e-43 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1) Potri.012G119500 [exp] 133 / 6e-38 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1) Potri.004G116200 [exp] 108 / 2e-27 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1) Potri.006G125200 [exp] 105 / 2e-26 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1) Potri.017G094900 [exp] 105 / 3e-26 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1) Potri.016G092000 [exp] 100 / 2e-24 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF07524 [flax] [poplar] Bromo_TP Bromodomain associated
Representative CDS sequence Show only first row Show all	>Lus10040612 pacid=23157744 polypeptide=Lus10040612 locus=Lus10040612.g ID=Lus10040612.BGIv1.0 annot-version=v1.0 ATGAAAACCAGATCGGCTCTCCGTCGACGGAAGACTCCTGCAGCCACTCCCGCTGAAGTACCCGCCACCAATCCATCAAGCTTCGCCGCCGATATCGCCA GAATCGCAATCGCGCAGATATGCAAATCGGTCGGGTACAAGTCGGCGGAGGCTCCGGCTCTCGAATCCCTATATCGAGTGGCCATACTGTACTTGGAAAC CCTAGCTACAAAGGCGGCGTCGTACTCGAACAATAGCAGCCGAACACAGTCGAATGTGTTCGACGTCGTCCACGCGCTGCAGGATCTCAACTCAGCGCGG GGATTCACCGGCGCAGCGGGGATCCACCACGGCTGCGTATTGAAGTCCAGCGTGGTGAAAGACGTGGAGCGTTTCGTGAATACGGTGGATGAAATCCCCT TTGCGAAGCCCATTCCGAGGGCCACTAATAGGTGCCCGGAGCAGGGTACGGGTACGGCGGAAGTGGAGGTGAGAGGGAAGCATATTCCGGATTGGTTGCC GGCTTTCCCTGATAAGAGCACGTATACGGAGGAAGTTAAAGGTAAGGAGAGGGAAAGAGAGCTGGAGTTGTGGGAGAAGTTGTGGATTGACGGTGGCGGC GGAGGAGAAGGGAATGGAGGTGGTGGGAAAGTGAACGTGGAAAAGAGTGGAGGGGAGTTGGGGAAGGAGAGGGAGAAGGTGAAGTTTCAAATTGGGAATG GGAAAGCGCTCGCATCGAAGAAGAGAAGAAGTACAGAGTTGTGA
AA sequence Show only first row Show all	>Lus10040612 pacid=23157744 polypeptide=Lus10040612 locus=Lus10040612.g ID=Lus10040612.BGIv1.0 annot-version=v1.0 MKTRSALRRRKTPAATPAEVPATNPSSFAADIARIAIAQICKSVGYKSAEAPALESLYRVAILYLETLATKAASYSNNSSRTQSNVFDVVHALQDLNSAR GFTGAAGIHHGCVLKSSVVKDVERFVNTVDEIPFAKPIPRATNRCPEQGTGTAEVEVRGKHIPDWLPAFPDKSTYTEEVKGKERERELELWEKLWIDGGG GGEGNGGGGKVNVEKSGGELGKEREKVKFQIGNGKALASKKRRSTEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31240			Bromodomain transcription fact...		Lus10040612 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	17.3	0.6543
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10017114 [exp]	21.0	0.6040
					Lus10014941 [exp]	24.7	0.6480
AT5G27990			Pre-rRNA-processing protein TS...		Lus10027901 [exp]	26.7	0.6177
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	52.0	0.6218
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	88.2	0.5781
AT1G48200			unknown protein		Lus10042704 [exp]	98.1	0.5616
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006120 [exp]	102.9	0.5933
AT2G25720			unknown protein		Lus10032479 [exp]	107.3	0.5871
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10006425 [exp]	108.3	0.5722

Compare expression of checked genes

Lus10040612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.