Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45100 229 / 3e-73 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G19700 215 / 9e-68 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1) AT3G12920 178 / 4e-53 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 159 / 2e-45 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT1G60610 98 / 5e-23 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G10650 95 / 8e-22 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G45976 87 / 2e-19 SBP1 S-ribonuclease binding protein 1 (.1) AT1G32740 86 / 6e-19 SBP (S-ribonuclease binding protein) family protein (.1) AT4G17680 78 / 2e-16 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G35070 75 / 3e-15 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018294 [exp] 561 / 0 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10031780 [exp] 191 / 6e-58 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10031202 [exp] 180 / 5e-54 AT3G12920 255 / 3e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10030891 [exp] 105 / 3e-26 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 105 / 1e-25 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 105 / 1e-25 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 102 / 6e-25 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013027 [exp] 100 / 1e-23 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 83 / 1e-17 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119200 [exp] 305 / 1e-102 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.015G118000 [exp] 305 / 1e-102 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.011G142700 [exp] 216 / 1e-67 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.001G439600 [exp] 202 / 2e-62 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.012G082200 [exp] 99 / 2e-23 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G148600 [exp] 99 / 2e-23 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.010G042200 [exp] 98 / 5e-23 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G027000 [exp] 98 / 6e-23 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.002G124700 [exp] 96 / 2e-22 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.004G175500 [exp] 94 / 8e-22 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040613 pacid=23157583 polypeptide=Lus10040613 locus=Lus10040613.g ID=Lus10040613.BGIv1.0 annot-version=v1.0 ATGGCAGTTGAAGCTCCTCATATCTCCCTCCTCCCTTCTCATACACTCCTCAACGATAACAGAGATCTCTTGAAACCGAATCAACCCAATACAATGTTCC CTGCTTCTCAAATGGGTGGCTTCAACGACGGGCTGGTGCTGCCTCAACAGACTGCCGGTCTGCCTTTCTATCAGTCGCTTGTTAATTGCGATCTGGGTTC GATGAAGCCTTCTTTTACGACCAACAACAACAAGTCTGATAGCGGAGTCACTTACACGGTCAACCCACCTCCTCCGGCGACGAGGAAGCGTCCAAGAGAT CCCGTCGCTGATCAGTTCCTTGCTGCTTATGGAGGAGCGGCGAAATTCTCCGGCGCCGACGGAGGCGTATCTTCTCTCATCGACGGTGATCTTGTTTCCC AGATGCAGCAACAGCAGTCTGAAATCGACCAATTCGTCGCCGAACATAACCAGAGAGTGAGGATTGAACTGGAGGAGAGGCGGAGGAGGCAATCGAGAAT GCTGGTGTCGGCGATCCAAGAAGGGATCGCGAAGAAGATGAAGGAGAAAGACGAGGAGGTTCAACGGATGGTGAAACTGAACTGGGTGCTGCAAGAGCGC GTGAAATCACTCTACGTCGAGAATCAAATCTGGAGGGATTTAGCGCAGACGAACGAGGCGGCGGCGAATACACTCCGGAGCAACCTCGAGCAGGTGCTGG CACATGTCGGCGACGATCGAAAAAACGAGTTTGGTGCGGCGGGTGCTGTGGCGGATGATGCAGAGTCGAGCTGTGGGAGCAGCGACGACCATCATCTCCG GCGGTGGGGGGCTGTCGCGGGTGCCTCCGCGGTGGCGGCGGAGGAGGAGAAGAGGAAAGATAACAACGGTCGGAAAATGATGTGCAGAAAGTGTGGGGAG AAGGAATCGAGTGTGCTGGTTCTACCGTGCAGGCATCTGTGCCTGTGTACAGTTTGTGGGTCCACTCTTGTTGGGACTTGTCCAGTCTGCGATTCCGTCA TGAATGGTAGTGTCCATGTTAATATTTGCTAG
AA sequence Show only first row Show all	>Lus10040613 pacid=23157583 polypeptide=Lus10040613 locus=Lus10040613.g ID=Lus10040613.BGIv1.0 annot-version=v1.0 MAVEAPHISLLPSHTLLNDNRDLLKPNQPNTMFPASQMGGFNDGLVLPQQTAGLPFYQSLVNCDLGSMKPSFTTNNNKSDSGVTYTVNPPPPATRKRPRD PVADQFLAAYGGAAKFSGADGGVSSLIDGDLVSQMQQQQSEIDQFVAEHNQRVRIELEERRRRQSRMLVSAIQEGIAKKMKEKDEEVQRMVKLNWVLQER VKSLYVENQIWRDLAQTNEAAANTLRSNLEQVLAHVGDDRKNEFGAAGAVADDAESSCGSSDDHHLRRWGAVAGASAVAAEEEKRKDNNGRKMMCRKCGE KESSVLVLPCRHLCLCTVCGSTLVGTCPVCDSVMNGSVHVNIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	0	1
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	1.7	0.7642
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	3.5	0.7437
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	8.8	0.7229
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	10.7	0.6894
AT1G47790			F-box and associated interacti...		Lus10026616 [exp]	11.0	0.6426
AT3G14250			RING/U-box superfamily protein...		Lus10026104 [exp]	13.4	0.6341
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	15.0	0.6417
AT5G43490			unknown protein		Lus10003153 [exp]	20.1	0.6884
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10040141 [exp]	23.7	0.6862
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10019622 [exp]	24.6	0.6707

Compare expression of checked genes

Lus10040613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.