Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61970 344 / 7e-114 signal recognition particle-related / SRP-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043202 [exp] 483 / 2e-169 AT5G61970 468 / 6e-160 signal recognition particle-related / SRP-related (.1) Lus10032538 [exp] 367 / 5e-126 AT5G61970 487 / 5e-170 signal recognition particle-related / SRP-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106200 [exp] 377 / 9e-127 AT5G61970 904 / 0.0 signal recognition particle-related / SRP-related (.1) Potri.015G105600 [exp] 370 / 3e-124 AT5G61970 915 / 0.0 signal recognition particle-related / SRP-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040614 pacid=23157687 polypeptide=Lus10040614 locus=Lus10040614.g ID=Lus10040614.BGIv1.0 annot-version=v1.0 ATGGAACTCGGCGATCAGATTAATCCTAGATACTCCATTAACGGTCCTAAAGTCGGCACAAATGCAGCACGGACTGCGGCATGGAGATTATACTCGATAT CGTGCAGAAGGTACTGCACTGCTAGGTTGAGGAGGTTATATAAGTCTCTCAAATTCACTCATGGCCGTGGTAAATACACTCGGAGAGCTATAACTGAAGC AACTGTGACTGAAGTAAGAGCTGTTTATGAAGAACTAGGAAAATATGGAGATATGGAGAATCAAATCCTGTGCCGTGAGCGCGTGGAGGAGCTAGAACCT AGTATCAGATACTGCCGACACAAAATTGGGGAGTCAAATTTAAAAACTTCCGATCTGTTGCAAATTGGCGCTGTTATTTCTGAGGCAAGGACTCAACAGG CTGCATCCTTGACAGAATTTCACTGGCTCGGGCACAAATATCCTATCTCTAATGCAAAAACTCGGGTTTCCATACTAAAAGCTCAAGAGCTGGAGAAAGA TCTGGATGGTAGAGCTAATGATTCATTTCCGGCAGACAAAAAACTAACAGTTTTGACAAAATATTTACCGCATAACATGAAGCTCGGGGTTATACTAACA GTATTTGGTAATAGATTCTCGACTGGTGCTGGTAATGCTGACCGCATGAAGGATGACTTGAGTGGTCTGCACGATGCTGTCACAGCTGTACTAGGACTTC GAACAATAGAGCGTAACCGCCTCTTGGTTAGCATTGCTAAAAGTAAGCTAGTCAAACTCCGGGATGAAAAGAACGATAAGGCTACCAAGCCAGAAGAACT TGTTCGCCTGTATTATCTGTTGGTACAGAATGCAGATGATCTTTCTGAATTGGTCAGCTCACGGAAAGAGAGAACATCAGAAGAAGTTGCGCGGTTAGCT TTCCGCGCTGAAAGGTGTTTCTATTTGGCAAAGTCTCACAGCATAGCTGGCAAGAGAGTAGAAGCGTATGCTCTCTACTGTCATGCCAAATCCCTTGCAG AGAATGCCTTGAAGAGTTATCAAGCTTCCTGTGACAAAGATGAGGTTATGGGGAAGATAGGAGACTGTCGGCTTGATCATAACCTGTCGCGGCTGGATAG TGCGAGATATGAATAG
AA sequence Show only first row Show all	>Lus10040614 pacid=23157687 polypeptide=Lus10040614 locus=Lus10040614.g ID=Lus10040614.BGIv1.0 annot-version=v1.0 MELGDQINPRYSINGPKVGTNAARTAAWRLYSISCRRYCTARLRRLYKSLKFTHGRGKYTRRAITEATVTEVRAVYEELGKYGDMENQILCRERVEELEP SIRYCRHKIGESNLKTSDLLQIGAVISEARTQQAASLTEFHWLGHKYPISNAKTRVSILKAQELEKDLDGRANDSFPADKKLTVLTKYLPHNMKLGVILT VFGNRFSTGAGNADRMKDDLSGLHDAVTAVLGLRTIERNRLLVSIAKSKLVKLRDEKNDKATKPEELVRLYYLLVQNADDLSELVSSRKERTSEEVARLA FRAERCFYLAKSHSIAGKRVEAYALYCHAKSLAENALKSYQASCDKDEVMGKIGDCRLDHNLSRLDSARYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61970			signal recognition particle-re...		Lus10040614 [exp]	0	1
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	6.0	0.8133
AT3G11591			unknown protein		Lus10016986 [exp]	6.2	0.8242
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	6.4	0.8277
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	9.8	0.8112
					Lus10012945 [exp]	11.7	0.8277
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	13.5	0.8112
AT1G60560			SWIM zinc finger family protei...		Lus10035898 [exp]	17.2	0.7993
AT5G46030			unknown protein		Lus10025438 [exp]	19.9	0.7989
AT4G39630			unknown protein		Lus10036631 [exp]	20.1	0.7088
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	22.8	0.7809

Compare expression of checked genes

Lus10040614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.