Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31260 425 / 4e-149 ZIP10 zinc transporter 10 precursor (.1) AT4G19690 409 / 4e-143 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT4G19680 374 / 2e-129 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT2G04032 358 / 1e-122 ZIP7 zinc transporter 7 precursor (.1) AT1G05300 300 / 4e-100 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 295 / 3e-98 ZIP3 zinc transporter 3 precursor (.1) AT3G12750 275 / 3e-90 ZIP1 zinc transporter 1 precursor (.1) AT5G62160 270 / 2e-88 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT5G45105 264 / 9e-87 ZIP8 zinc transporter 8 precursor (.1.2) AT2G30080 207 / 4e-64 ATZIP6, ZIP6 ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041647 [exp] 333 / 6e-113 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10041613 [exp] 327 / 2e-110 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10024107 [exp] 326 / 2e-110 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10006935 [exp] 284 / 3e-94 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014062 [exp] 260 / 1e-84 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 228 / 3e-73 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10014063 [exp] 226 / 3e-71 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10031307 [exp] 164 / 2e-49 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10031099 [exp] 99 / 4e-25 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117900 [exp] 464 / 1e-164 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 451 / 7e-160 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.010G134300 [exp] 403 / 2e-140 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.006G006800 [exp] 325 / 7e-110 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.010G135400 [exp] 324 / 9e-110 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1) Potri.006G006600 [exp] 323 / 1e-109 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G173300 [exp] 311 / 3e-104 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 302 / 6e-101 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 297 / 5e-99 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.009G074100 [exp] 209 / 9e-65 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10040615 pacid=23157779 polypeptide=Lus10040615 locus=Lus10040615.g ID=Lus10040615.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTCACTTCTCGATCGTAACAACCATACTTATCCTCGTTGGAGCTGCGGCGGCGGCGGAAGATGATCAATCATGCAGCGGCGGAACCTCCA GCGGGTGCAACGACAAATCCGGAGCAGTGCCGCTAAAGCTAATAGCGACGTTCTCCATCCTCGTCGCCAGCATCATCGGCGTGTGTCTGCCTTTGTTCAC GAGATCGGTTCCAGCTCTAAACCCGGAGAAGAACCTGTTCGTGATCGTGAAGGCGTTTGCCTCCGGTATAATACTGGCCACCGGATTCATGCACGTGCTG CCTGACTCGTTCGACATGCTGTCGTCCAGCTGTCTAGCGGAGAGTCCGTGGCACAAGTTCCCATTCACCGGGTTCGTCGCCATGCTGTCGGCTTTGGTGA CGCTCCTTGTGGATTCTGTTGCGACTAGCTTCTATGGGAATAAGTTGAAAAAGGTGACGGCGGCGGGAGTTCTGCCTGTTGACGATCGGGAGATGGGAAA CGACGTCGTTGGGGTGGATTCGAATGTTAGCGGAGGACATGTTCATCACGGGCATCATCATGGGATGAAAGTTGCTGATAATGGCCAGCAATTGATGCGT TACAGAGTGATTGCCATGGTTATGGAGCTGGGAATAGTGGCTCACTCAGTGGTGATAGGGTTATCACTGGGAGCCTCAAACAACACTTGCACAATCAAAG GCCTGGTCGCCGCCCTTTGCTTCCACCAAATGTTCGAAGGAATGGGCCTCGGTGGCTGCATTCTTCAGGCGGAGTACACTTTGGTGAAGAGGTCGATCAT GGTGTTCTTCTTCTCCACAACGACGCCGTTCGGAATCTTGGTCGGGATGGCCATGTCCAAGACGTACAAAGAGGACAGCCCCACGGCGTTGATCACGGTG GGCCTGCTCAATGCTTCCTCGGCTGGGCTTCTGATATACATGGCCTTAGTGGATCTCCTGGCTGTGGAATTTATGGGCCCAAAGTTGCAGGGTAGCATCA GGCTTCAGCTTAAGGCCTTCTTCGCTGTTCTGCTTGGTGCTGGTGGCATGTCCCTCATGGCTAAATGGGCTTGA
AA sequence Show only first row Show all	>Lus10040615 pacid=23157779 polypeptide=Lus10040615 locus=Lus10040615.g ID=Lus10040615.BGIv1.0 annot-version=v1.0 MAAAHFSIVTTILILVGAAAAAEDDQSCSGGTSSGCNDKSGAVPLKLIATFSILVASIIGVCLPLFTRSVPALNPEKNLFVIVKAFASGIILATGFMHVL PDSFDMLSSSCLAESPWHKFPFTGFVAMLSALVTLLVDSVATSFYGNKLKKVTAAGVLPVDDREMGNDVVGVDSNVSGGHVHHGHHHGMKVADNGQQLMR YRVIAMVMELGIVAHSVVIGLSLGASNNTCTIKGLVAALCFHQMFEGMGLGGCILQAEYTLVKRSIMVFFFSTTTPFGILVGMAMSKTYKEDSPTALITV GLLNASSAGLLIYMALVDLLAVEFMGPKLQGSIRLQLKAFFAVLLGAGGMSLMAKWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Lus10040615 [exp]	0	1
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	2.4	0.8705
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	3.3	0.8806
					Lus10029831 [exp]	4.9	0.8451
					Lus10001144 [exp]	5.9	0.8481
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	7.7	0.8241
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	10.7	0.8672
AT5G39150			RmlC-like cupins superfamily p...		Lus10006543 [exp]	12.0	0.8614
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	13.6	0.8548
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	30.0	0.8011
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	31.0	0.8531

Compare expression of checked genes

Lus10040615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.