Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19670 271 / 1e-85 RING/U-box superfamily protein (.1.2) AT5G60250 83 / 7e-17 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25370 75 / 3e-14 RING/U-box superfamily protein (.1.2) AT5G37560 72 / 1e-13 RING/U-box superfamily protein (.1) AT2G25360 72 / 2e-13 RING/U-box superfamily protein (.1) AT3G45480 69 / 1e-12 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45580 69 / 2e-12 RING/U-box protein with C6HC-type zinc finger (.1) AT3G43750 67 / 4e-12 RING/U-box protein with C6HC-type zinc finger domain (.1) AT3G45570 65 / 2e-11 RING/U-box protein with C6HC-type zinc finger domain (.1) AT3G45460 60 / 1e-09 IBR domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018293 [exp] 763 / 0 AT4G19670 285 / 9e-91 RING/U-box superfamily protein (.1.2) Lus10038341 [exp] 478 / 7e-166 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 319 / 5e-104 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 89 / 7e-19 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10000412 [exp] 56 / 4e-08 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10036127 [exp] 51 / 1e-06 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10026104 [exp] 49 / 7e-06 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 44 / 0.0002 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117600 [exp] 333 / 8e-110 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 307 / 2e-99 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.006G104700 [exp] 78 / 3e-15 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 67 / 1e-11 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G037200 [exp] 62 / 2e-10 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 58 / 3e-09 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 55 / 4e-08 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040616 pacid=23157789 polypeptide=Lus10040616 locus=Lus10040616.g ID=Lus10040616.BGIv1.0 annot-version=v1.0 ATGGAGGATGAAGCTGGTGGTACTAAATTGGAAGATGGCGAGGAAGAGTTTCGGAGCTGTTGTGGAGATGATGATGATCATGATGATGAAATTTGGAAGA TGACTGAAGATGAGGTTTCAGTGAAGATGTACTTTAAAGGGTTGTCAATAACTGAAGAAATTGGCTATTCCGGAATTGGTGTTGTCATGGAAAGAAGAAA GGGAGAGGTTGCAATTGTTGATCAGGTGCAAAAGAAGCTTGATTTCTATGTTGATTCCACGGTTGCTGACTACTTGGCGCTTATGGAAGGTCTTGTCGAG GCTGTGAAGAATGGCATTTCTCATGTTTATGCCTACACTGACTCCAGTTTGTTGTATAACCAGGTACTGATAGTTACGTTTAAGCAGATGACACTAGAGG AGAAGCTTGAGATTCCATTCATTCTAGCATTGAGGGAAAGGATCATCGAGCTCGCCGGTGATCTGGAAACATTTCAACTGAAACTCGTTCCGAGCTGCTA TCTTGAGAGATCATCGCGTCTTGCTGGGACAGCAGTTGGCATTGTCACTTTCCCTGCAAGTGGAGATAAATCACTTGAAAACTGTTCCATTTGTTGCGAA GACAAAATGTCGGCGATGATGATTACAATGAAATGTTCTCACAAGTTTTGTTCACATTGTATGAGGACATATGTGGAAGACAAAATGCAGTCTTGTCAAG TACCCATCAGATGCCCCCAACCGGGATGCAGATATTACATATCGCTCTCCGTAGGCCGATCGTTCCTCACTTGTGATTCATACGAACCTTTCGTGAAAGC TCAAGAAGAAGCCCATGCCCTTCTTTCCGGAAGAATTTGTTGCCCTCATGCAAATTGTTCTGTTTTACTTGACTCTACTCATGAATGTTTGTCTGCAAGG GAAAGTTCTTCAAGTCAGTCGGATAACAACTGGTGTTTTCAGGAGTTCTGTTATTCATGCGGATCAGAGTACAGAGATGGCGAGCAGACTTGCCAGTGTG CCTTGTGGGAGGAAGACACCAATACCGACAATTCGATTGCACGATCTGTTCAAGTGTCTGAACAATGGGCATGGGAGACTTTTAATACAATGCCCATGTT AACGGATGCATATTCAGACCAAGAAAGATCACAGCTTGCACTAATCCAGAGATTCCTCTCTGGAGGATTCAGCTTGAGTGATCACCACCACCCGCCCCAA TCCCCTCCTCGTTGTACAGATTCTTCATCAGTCGACATCATGAAAGACCTGCAACCATTCCCTTGGCTCGAGAGATTCATGTCTGTGATCAGTGACGACT ACGATGAATACTCTTCGTTTGGTGATAGGTGA
AA sequence Show only first row Show all	>Lus10040616 pacid=23157789 polypeptide=Lus10040616 locus=Lus10040616.g ID=Lus10040616.BGIv1.0 annot-version=v1.0 MEDEAGGTKLEDGEEEFRSCCGDDDDHDDEIWKMTEDEVSVKMYFKGLSITEEIGYSGIGVVMERRKGEVAIVDQVQKKLDFYVDSTVADYLALMEGLVE AVKNGISHVYAYTDSSLLYNQVLIVTFKQMTLEEKLEIPFILALRERIIELAGDLETFQLKLVPSCYLERSSRLAGTAVGIVTFPASGDKSLENCSICCE DKMSAMMITMKCSHKFCSHCMRTYVEDKMQSCQVPIRCPQPGCRYYISLSVGRSFLTCDSYEPFVKAQEEAHALLSGRICCPHANCSVLLDSTHECLSAR ESSSSQSDNNWCFQEFCYSCGSEYRDGEQTCQCALWEEDTNTDNSIARSVQVSEQWAWETFNTMPMLTDAYSDQERSQLALIQRFLSGGFSLSDHHHPPQ SPPRCTDSSSVDIMKDLQPFPWLERFMSVISDDYDEYSSFGDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19670			RING/U-box superfamily protein...		Lus10040616 [exp]	0	1
AT5G06940			Leucine-rich repeat receptor-l...		Lus10040500 [exp]	1.0	0.9520
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	2.4	0.9298
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	4.5	0.9255
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	6.9	0.9414
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	8.1	0.9084
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	10.1	0.9033
AT3G20898			unknown protein		Lus10040827 [exp]	13.2	0.8846
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	13.7	0.9175
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	14.5	0.9105
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	15.5	0.9059

Compare expression of checked genes

Lus10040616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.