Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05320 564 / 0 O-fucosyltransferase family protein (.1) AT3G26370 51 / 1e-06 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018291 [exp] 835 / 0 AT3G05320 563 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 51 / 2e-06 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10029239 [exp] 45 / 0.0001 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117500 [exp] 674 / 0 AT3G05320 582 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G118800 [exp] 669 / 0 AT3G05320 587 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 48 / 9e-06 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040618 pacid=23157894 polypeptide=Lus10040618 locus=Lus10040618.g ID=Lus10040618.BGIv1.0 annot-version=v1.0 ATGGACTTACACTCCAGCTGCAAGAAACCAAGGCTCCTTGTGAGGAACTTGGATTCATTGCTCTACAAATGCCTAGCTCTAATTGGCCTAGCTCTTTTTA TTAGAGCTGTAGTTGTTCTTCCTTTCTCTAGCTACGGTGGTATAATTCGCATGCAGAAACTTGATTCAGTCCATGGAATCCGTCAGAACAAGTTCTTGGA AGTTCCGCAGATAGTGTGGGGGCTAAACAATCAGAAGATAGCATTTGCAAGATCCTGCCTGACTGCCAGAATGCTCAACCGTACACTTCTGATGCCTAGC CTCAGTGCTTCGCTCTTCTACAAGGAAGTCGATCGCTTGCAGCCGATTTCGTTCGACAAAGTTTTCAAATTCGACAGATTTAACGAGATGTGTAAAGGGT TTGTGCAATTGGGACGATATTCGGATCTGAGGAACGAATCGTCCAACAGTGTTTATGAGGTTCAAAAGGGGAGTGGAAGGAGATGGACTGTTGAGAGAGA TTTGGATCAGTTGAATGGAATAATGAGTGATGATGAACACGAACTGATTCGAATAGTCGGGAAGAATCCGTTTCTATGGCACGATCATTGGCCCGTTAAG GACTACGCTCGAGTTTTTGAATGTTTGGCTTTAGTTGATGAGATAAGTAGAGAGGCGGATAGAGTTGTGTCGAAAATTCGAGAGACCGGGAAGACGATGA TGAGAGCTAGTAGAGATGGCGGGGATGCTAATTCGGTTCCATACATTGCGGTTCACATGAGGATAGAGATAGACTGGATGATCCACTGCAAGAAGCTGGA GCAAAGATCGAACATTACCGAAATTTGCAGCAGCAAGAAGGAGATCATGGAAAGAGTTGGCAACATTGGTGGCTTGAGAAATCCAACAGTTGCCTATCTA GCTGTGGCCGATAGTCTGTTGGAGGATTCGTCGATACTTTCCGGTTGGAAGGAAGGATTGGTTCCTATGGAAAAGAAGAAACTTGGTGTTGATGGGATCT ATAAGAAGTACCCTTATCTGATTCAGTCAGCTATAGATTATGAGGTGTGCTTGAGAGCCGATGTGTTCGTAGGGAACAGTTTCTCGACGTTTTCAAGCCT TGTAGCCCTCGATAGGACTCAGAAGACGATTAGGATGGGCGTTACAAGCTCCTGTAATGGAGTAGACTTGAGATGGCCTACTTATGCATACAACATTCTA GGGGAATCAAATAGACCTCATAGATGGATGACAAACATGTCTGATTCCAGCCTTAAAGCTATCAGCTATGGCACTAATGCCATCTCTTGTTGA
AA sequence Show only first row Show all	>Lus10040618 pacid=23157894 polypeptide=Lus10040618 locus=Lus10040618.g ID=Lus10040618.BGIv1.0 annot-version=v1.0 MDLHSSCKKPRLLVRNLDSLLYKCLALIGLALFIRAVVVLPFSSYGGIIRMQKLDSVHGIRQNKFLEVPQIVWGLNNQKIAFARSCLTARMLNRTLLMPS LSASLFYKEVDRLQPISFDKVFKFDRFNEMCKGFVQLGRYSDLRNESSNSVYEVQKGSGRRWTVERDLDQLNGIMSDDEHELIRIVGKNPFLWHDHWPVK DYARVFECLALVDEISREADRVVSKIRETGKTMMRASRDGGDANSVPYIAVHMRIEIDWMIHCKKLEQRSNITEICSSKKEIMERVGNIGGLRNPTVAYL AVADSLLEDSSILSGWKEGLVPMEKKKLGVDGIYKKYPYLIQSAIDYEVCLRADVFVGNSFSTFSSLVALDRTQKTIRMGVTSSCNGVDLRWPTYAYNIL GESNRPHRWMTNMSDSSLKAISYGTNAISC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	0	1
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10020106 [exp]	4.0	0.7801
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	5.0	0.7952
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	7.6	0.7857
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	8.7	0.7753
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10029418 [exp]	9.9	0.7579
AT4G32070		Phox4	Phox4, Octicosapeptide/Phox/Be...		Lus10001948 [exp]	11.2	0.7434
AT2G36210			SAUR-like auxin-responsive pro...		Lus10017018 [exp]	13.7	0.7550
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10012109 [exp]	13.9	0.7621
AT5G17350			unknown protein		Lus10035268 [exp]	29.2	0.7637
					Lus10032784 [exp]	29.2	0.6695

Compare expression of checked genes

Lus10040618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.