Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31280 873 / 0 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 805 / 0 AGO3 ARGONAUTE 3 (.1) AT1G69440 519 / 3e-166 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G48410 470 / 4e-147 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 460 / 5e-144 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 447 / 5e-139 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT2G27040 326 / 3e-95 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 325 / 4e-95 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G32940 277 / 1e-78 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 258 / 4e-72 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018290 [exp] 1716 / 0 AT1G31280 907 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10036794 [exp] 564 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 562 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 561 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10039386 [exp] 456 / 7e-144 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10031331 [exp] 462 / 1e-143 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 457 / 9e-143 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10017983 [exp] 450 / 2e-138 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 447 / 2e-137 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118700 [exp] 1103 / 0 AT1G31280 910 / 0.0 argonaute 2, Argonaute family protein (.1) Potri.010G163800 [exp] 563 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.015G117350 [exp] 525 / 4e-177 AT1G31280 466 / 2e-156 argonaute 2, Argonaute family protein (.1) Potri.015G117401 [exp] 476 / 3e-155 AT1G31280 405 / 5e-130 argonaute 2, Argonaute family protein (.1) Potri.008G158800 [exp] 473 / 5e-149 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G081300 [exp] 469 / 2e-147 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.012G037100 [exp] 463 / 1e-144 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 462 / 7e-144 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.006G118600 [exp] 446 / 1e-139 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.009G001500 [exp] 444 / 3e-138 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10040619 pacid=23157842 polypeptide=Lus10040619 locus=Lus10040619.g ID=Lus10040619.BGIv1.0 annot-version=v1.0 ATGCAAGGCCCACAGTGCTGGCGATTGTCCTCGAGCAAACCCAGACCCAGCCCTCTGTTGGGTCAGGCCCATTATAACTACAGAGTCGGTTCAACCAACA CTCGTGCGGTAAGCTGTGATGCTGACGCAGACACCGGCGTGGACCGTGGTCATGAAAATTTAGTAGATAAAGACAGAGAAACCGCCGGTAAGTCACACGA ACAGAGCAGGGGAAATATCTCCGACGAACCAATGAATCTTGACGTGAAACCCATCCCAGCAGTAGTATATACAAAAATGGAGCTACAGAGCTTGAATAAG TCCGCGGGAATCTCCCAACATTTTTCCCACAAAACACAATTAGCGTCTCCTCCAAAAACCGTTCCTTTCCGCCTGACAATTCCTCGATATCATCGTCCTG AACTAACAATTTTTTCCCTGAATCTTCTCGTAGTCTCCGATATCAGCAGAAACTCAGAGGCGGCGGCGGTTTTCAGCGAGGAAGAGGATGGCAAAACGGT AATTTTGGCGGCAACGGTCAGTATCAGCCGGAGTTTAATTGGGACGATGGTCGTCGGAGTCAAGGCCATTTGGGCCCCACTCGTGGTAGAGGCAGAGGAG GAGGAGGAGGAGCAATGCCGCCGATCAACGGCGGGGGGGGGAAAGGAGAAGGGGGGGGGTTGGGAAACCGGCCATGGCGGAGAGGATGAAAGAGGAAGAG GAAGGGGAAAGTACGGCAGAGGTAGAAGGAGAGTTCGAGAAGAAAATTTAGAGACGGCGGAATCGGAATCTCTTCCGCCGCCTCCTTCTCCCCTTGTTGC CGCCGTAACTCCATTCCAGGCCGGCCAATTCCCAACTGATGCTGATGTTCTTGGTAGAAAAAAATCGATGCCAATATCTGACAACTCGGATAACCCATCT GCCGAAAAAGTCGTTCCGGTTAATCGACCGGATAAAGGCGGCACAATGGCTATCAGGAACACCAAGATCCGCGTGAATCACTTTCCTGTCAGGTTCAATC CTGAAAGCACCATCAGACACTACGACGTGAATGTGAAACCAGATGATCATGATCTGGCCCATAAAAAAGAATCCCCTCCTCCTGCCGCATCGAAGCTGTC GAAATTGATCCAAAGAATGATTCGCGACAAGCTATTCAGCGACGACCCTTCTCATTTCCCTATCTCGATGACCGCCTATGATGGCGAGAAGAACATCTTC AGCGCAGTCCCACTGCCAACAGGACAGTTCAAGGTCGAACTCGCAGATCATGGAAGTACTAATTACATTTTCACCATCAAGCTTGTGAATGAACTCAAGC TCTGCAGGCTGAAAGATTACCTCTCAGGAAATCTCTTCTCCATACCGAGGGAGGTTTTACAAGGAATGGATGTGGTGATGAAGGAGAATCCTGTCAGGAA CATGATCTCCACCGGTCGCAGTTTCCATCCAATGGACGGTCACGATGAACTTGGTTATGGGATAAGAGCTTCTAAAGGATTCCAACATAGCCTGAAACCA ACACTTCAAGGTCTGGCTATGTGCTTGGACTATTCGGTCGTTGCATTTCGAAAACGGATGCCAGTTCTCGACTTCCTGAAAGAGCATATCCCTGGGATTA GCCTGAATAATGATTTCTTCAGGTTCAGGAAAGATGTTGAGAGAGCATTGAGGGGACTCAAAGTCAATGTGACTCATAGGTTGACTAAACAGAAGTTCGT AGTCTCCGGGTTGACTAAGGAGAATTCGCGTCGTCTCAAGTTCCCAACTGAAGATCCGAGTGGTTGCGAAGGGGCTAGTCATGAGATCAGACTGGTGGAA TACTTCAGGGATAAGTACAAGATGGATATTATGTACAAGGACATTCCTTGCCTGGAGTTGGGGAAATCCGACAGGAAAAACTACGTGCCTATGGAGCTTT GTGTTTTAGTTGAAGGGCAGATATTTCCCAAGGAGCAGCTTGATAAGAATGCAGCTGTGTTTCTTAAGAGGATGTCGCTTGCTAAGCCTGATGTTAGAAA GAGTACCATATGTAATATGGTCAAGGATGCTCAAGGAAATGGACCTTGTGGAGGAGAAGTGATCCGAAACTTCGGAATGGAGGTCGACACGAAAATGACT TCAGTTGTTGGGAGAGTGATAGCTGCTCCGGAGTTGAAATTATGTAACCGGAACGGAACTGCCATTCGAGTACCGGTCGACAAGGACAAATGCCAATGGA ATCTCCTTGGCAAGAGAGTAGTAGAAGGCAAATCGATCTCGAGGTGGGGTGTGATCAATTTCACCTCATCGGATCGACACAGGCTGAATCCGAGAACATT CGTTCCGAACCTGATTACGCGGTGCAGGAATCTGGGCATGCTGATGGACGAGCCTCTCTTTGTCGAACCATCCAACATGCACATGTTATCAAACACCAAC GCTCTTCAGGAGCTCCTCGAGAGCCTCAACGATCGCGCTTACCAAATCTCTCATCAGGGGAAGCTGCAGATTCTCATTTGTGTGATGTCAGGGAAGCATC CTGGATACAAGAATCTCAAGTGGATCTCCGAGACTAGAGTTGGTTTGGTGACACAATGTTGTCTTTCTTATCATGCCAATGAAGGAAATGATCAGTATCT AGCTAACTTGGCCCTCAAGATTAATGCCAAACTAGGAGGAAGCAATGCTGAGCTTTTCGACCGGTTTTCGTTCTTCGAAGGTGGTAGGGGAGGAGGAGGA GTGATGTTCATTGGTTCTGATGTTAACCACCCTGCCTCGAGGAACACGACAAGTCCATCGATTTCGGCAGTTGTTGCGACCGTGAACTGGCCTGCTGCAA ACCGGTACGCAGCTCGAGTTCGTCCTCAGAACAACCGGGTCGAGAAGATTGTCAGCTTTGGTGAAATGTGTTTGGAGCTAGTTGAGAGCTATGCTCGTCT CAACAGGGCGAAACCAGAAAAGATTGTGATTTTTCGCGACGGGGTTAGTGAGGGACAGTTCGACATGGTTCTGAATGAAGAATTGCTCGACATGAAGAGA GCGTTCCGCTCAAACAATTACAGCCCTACCCTTACGTTGATTGTTGCTCAGAAGCGTCACCAGACTCGTTTGTTCCCCGAGAACCAAAGGGACGGTGGGT TCACGGGTAATGTGTCCCCCGGTACGGTTGTGGACACAAAAATCGTGCACCCGTTCGAGTTCGATTTCTACCTGTGTAGCCACTACGGAAGCCTTGGGAC TAGCAAGCCGACTCACTACCATGTCCTTTGGGACGAACACGGGTTCACTTCAGATCAGGTTCAAAAGCTCATTTACAATTTGTGCTTCACGTTCGCGCGA TGCACCAAGCCGGTTTCGTTGGTCCCTCCGGTTTACTACGCCGATCTAGTTGCATACCGGGGGAGGCTATACTATGAGGCCGTCATGGAAGGCCAGTCTC CTGCATCTGTCGGATCAACGATTTCTTCTACTGCATCATCTTCGACGTCTTCATCAGCTTCGATAGATGACAGGTTCTACAGGTTGCATGCTGACCTGGA GAACGACATGTTTTTCATATGA
AA sequence Show only first row Show all	>Lus10040619 pacid=23157842 polypeptide=Lus10040619 locus=Lus10040619.g ID=Lus10040619.BGIv1.0 annot-version=v1.0 MQGPQCWRLSSSKPRPSPLLGQAHYNYRVGSTNTRAVSCDADADTGVDRGHENLVDKDRETAGKSHEQSRGNISDEPMNLDVKPIPAVVYTKMELQSLNK SAGISQHFSHKTQLASPPKTVPFRLTIPRYHRPELTIFSLNLLVVSDISRNSEAAAVFSEEEDGKTVILAATVSISRSLIGTMVVGVKAIWAPLVVEAEE EEEEQCRRSTAGGGKEKGGGWETGHGGEDERGRGRGKYGRGRRRVREENLETAESESLPPPPSPLVAAVTPFQAGQFPTDADVLGRKKSMPISDNSDNPS AEKVVPVNRPDKGGTMAIRNTKIRVNHFPVRFNPESTIRHYDVNVKPDDHDLAHKKESPPPAASKLSKLIQRMIRDKLFSDDPSHFPISMTAYDGEKNIF SAVPLPTGQFKVELADHGSTNYIFTIKLVNELKLCRLKDYLSGNLFSIPREVLQGMDVVMKENPVRNMISTGRSFHPMDGHDELGYGIRASKGFQHSLKP TLQGLAMCLDYSVVAFRKRMPVLDFLKEHIPGISLNNDFFRFRKDVERALRGLKVNVTHRLTKQKFVVSGLTKENSRRLKFPTEDPSGCEGASHEIRLVE YFRDKYKMDIMYKDIPCLELGKSDRKNYVPMELCVLVEGQIFPKEQLDKNAAVFLKRMSLAKPDVRKSTICNMVKDAQGNGPCGGEVIRNFGMEVDTKMT SVVGRVIAAPELKLCNRNGTAIRVPVDKDKCQWNLLGKRVVEGKSISRWGVINFTSSDRHRLNPRTFVPNLITRCRNLGMLMDEPLFVEPSNMHMLSNTN ALQELLESLNDRAYQISHQGKLQILICVMSGKHPGYKNLKWISETRVGLVTQCCLSYHANEGNDQYLANLALKINAKLGGSNAELFDRFSFFEGGRGGGG VMFIGSDVNHPASRNTTSPSISAVVATVNWPAANRYAARVRPQNNRVEKIVSFGEMCLELVESYARLNRAKPEKIVIFRDGVSEGQFDMVLNEELLDMKR AFRSNNYSPTLTLIVAQKRHQTRLFPENQRDGGFTGNVSPGTVVDTKIVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHGFTSDQVQKLIYNLCFTFAR CTKPVSLVPPVYYADLVAYRGRLYYEAVMEGQSPASVGSTISSTASSSTSSSASIDDRFYRLHADLENDMFFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10040619 [exp]	0	1
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Lus10006564 [exp]	4.5	0.7449
					Lus10024934 [exp]	6.5	0.6616
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010467 [exp]	6.6	0.5772
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	10.4	0.6213
AT5G03050			unknown protein		Lus10030557 [exp]	12.6	0.6043
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Lus10002196 [exp]	15.7	0.5810
AT2G03630			unknown protein		Lus10026665 [exp]	19.4	0.5951
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	26.3	0.5595
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021391 [exp]	27.0	0.6267
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	27.1	0.5595

Compare expression of checked genes

Lus10040619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.