Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31300 336 / 3e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G19645 327 / 7e-113 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G10360 203 / 2e-64 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018287 [exp] 483 / 3e-174 AT1G31300 375 / 5e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10038335 [exp] 450 / 3e-161 AT1G31300 375 / 3e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10036199 [exp] 446 / 1e-159 AT4G19645 379 / 6e-134 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10034433 [exp] 205 / 7e-65 AT4G10360 321 / 3e-111 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10019130 [exp] 202 / 1e-63 AT4G10360 315 / 7e-109 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10036784 [exp] 51 / 2e-07 ND / Lus10043259 [exp] 48 / 2e-07 ND / Lus10033157 [exp] 47 / 3e-06 ND / Lus10033001 [exp] 45 / 1e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118100 [exp] 378 / 8e-133 AT1G31300 349 / 7e-122 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.015G113200 [exp] 376 / 5e-132 AT1G31300 406 / 3e-144 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.002G056600 [exp] 328 / 2e-113 AT4G19645 352 / 4e-123 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.005G206000 [exp] 325 / 6e-112 AT1G31300 348 / 2e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.019G133500 [exp] 203 / 2e-64 AT4G10360 281 / 2e-95 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10040622 pacid=23157717 polypeptide=Lus10040622 locus=Lus10040622.g ID=Lus10040622.BGIv1.0 annot-version=v1.0 ATGGTGCCTGTGCCTAAGGAAACAGTTATGGCAATAGAAGCTTACCGCAGTCAGGCTCAAGTGCTGGTTAAGAGTTACTTATTTGCTGACCCTTTTGTTC CATACACTTCTGTTCTTGGAGGCGTAGTCGCTTGCAAAGTGATCTATGACATAACTCAGTTGATTAGCACGTTTTACATCAAGACATACAATGGGCTTAC AAGAATACAGAGAATCGAGTGGAACAATCGGGGCATGTCCTCATTACACGCGATCTTTATAACAGCTTTGTCATTGTACTTTGTATTCTGGTCTGATCTA TTTTCTGACAAAACAAATGCCGGATATGTTACCCTACGAAGCTCACCATTATCCATATTTGGATTGGCTGTTTCGGTTGGATACTTCATTGCAGATCTTG GGATGATTTTTTGGTTTTATCCTTCTTTAGGTGGGATGGAATATGTTGTTCATCATTGTCTTTCTGCAATAGCAGTAGGATACTCTATGTTGTCTGGGGA AGGACAGTTATATACATACATGTGCCTCATCTCGGAAGTCACTACACCTGAGATAAACATGAGATGGTATCTTGACATATCAGGCATGAAACGGTCAACT GCGTATGTTGTAAATGGTGTACTGATCTTCATCTTTTGGTTGATTGCCAGAGTCTTGCTGTTCTTTTACATCTTCTACCACATCAACATGCACTTTGATC AGGTTGCTGTTAACCCATCTACAAACAGGCAGGTGCAAGCAAGGGAGATGCGAACTGTAATGCAAGGAGTGGGCATGTATGCAACCGAGACTGCTGGCAA TGTTTACTACCGTGGATCTATAAGGACAGCTGCTAGAGTAGCAGCTAGAAGTTCTGAGATGATGCCAGAAAACCATATCAATGGAACACAACCCCCTGCA ACACAATCAAACCAGTGA
AA sequence Show only first row Show all	>Lus10040622 pacid=23157717 polypeptide=Lus10040622 locus=Lus10040622.g ID=Lus10040622.BGIv1.0 annot-version=v1.0 MVPVPKETVMAIEAYRSQAQVLVKSYLFADPFVPYTSVLGGVVACKVIYDITQLISTFYIKTYNGLTRIQRIEWNNRGMSSLHAIFITALSLYFVFWSDL FSDKTNAGYVTLRSSPLSIFGLAVSVGYFIADLGMIFWFYPSLGGMEYVVHHCLSAIAVGYSMLSGEGQLYTYMCLISEVTTPEINMRWYLDISGMKRST AYVVNGVLIFIFWLIARVLLFFYIFYHINMHFDQVAVNPSTNRQVQAREMRTVMQGVGMYATETAGNVYYRGSIRTAARVAARSSEMMPENHINGTQPPA TQSNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10040622 [exp]	0	1
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	1.0	0.7606
AT5G15880			unknown protein		Lus10003057 [exp]	2.0	0.7508
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	10.8	0.7193
AT2G42780			unknown protein		Lus10010947 [exp]	12.6	0.7505
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	23.6	0.6944
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	30.2	0.6862
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	32.5	0.6829
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10028185 [exp]	37.1	0.6097
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	48.8	0.6856
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	49.2	0.6753

Compare expression of checked genes

Lus10040622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.