Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45120 140 / 1e-39 Eukaryotic aspartyl protease family protein (.1) AT5G10080 50 / 1e-07 Eukaryotic aspartyl protease family protein (.1) AT4G35880 50 / 3e-07 Eukaryotic aspartyl protease family protein (.1) AT1G66180 46 / 3e-06 Eukaryotic aspartyl protease family protein (.1) AT3G42550 45 / 7e-06 Eukaryotic aspartyl protease family protein (.1) AT3G02740 45 / 7e-06 Eukaryotic aspartyl protease family protein (.1) AT2G28010 45 / 1e-05 Eukaryotic aspartyl protease family protein (.1) AT2G28030 45 / 1e-05 Eukaryotic aspartyl protease family protein (.1) AT3G51350 45 / 1e-05 Eukaryotic aspartyl protease family protein (.1) AT3G52500 44 / 1e-05 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018286 [exp] 251 / 4e-82 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 58 / 4e-10 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 54 / 1e-08 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 51 / 9e-08 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005212 [exp] 50 / 1e-07 AT3G52500 145 / 2e-40 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 50 / 2e-07 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 50 / 3e-07 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 50 / 3e-07 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10013325 [exp] 49 / 3e-07 AT3G52500 159 / 2e-45 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118000 [exp] 122 / 3e-33 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 119 / 8e-32 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 57 / 1e-09 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 56 / 2e-09 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 52 / 4e-08 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 51 / 1e-07 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 50 / 1e-07 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.005G079900 [exp] 49 / 5e-07 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G063800 [exp] 49 / 6e-07 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 48 / 8e-07 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10040623 pacid=23157661 polypeptide=Lus10040623 locus=Lus10040623.g ID=Lus10040623.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCATCATCATCATCATCATCATCATCACAACCTTCTTCCTACTCCTCAATGCCTTCACATTTTTATCAATCCATTCCCAAAATACCCCTC CAACCTCACTTATTCTACGCCTCACCCTCTCCAAAACCTCCCTCCCACCACCCAAAAAACAACACAAAACTACATCCATTTCATCCACCCAAACGACGTC GTCGAGCACAATAACGGCGCCGTTGAGAGGAGTCCGAGACGGATACCTCATCCCTTTAAACCTAGGCACTCCACCTCAGCAGGTCCAAGTCTACCTGGAC ACAGGCAGCGACCTCACCTGGGTCCCATGTGGCAACCTCACGTTTGACTGCATTGACTGCGACGACTACTACAAGTCAACCCTTGCTCCCAAATCCTTAG GCAGCTTCACTCCTTCACTCTCCTCCACCTCCTATCGAGACACGTGCGGCAGCCGGTTCTGTTCCCATGTCCACAGCTCCCTCGATCTTTGCATTGTCTC CGGCTGCTCGTTGACCACCGTCGTTTAA
AA sequence Show only first row Show all	>Lus10040623 pacid=23157661 polypeptide=Lus10040623 locus=Lus10040623.g ID=Lus10040623.BGIv1.0 annot-version=v1.0 MASLIIIIIIIITTFFLLLNAFTFLSIHSQNTPPTSLILRLTLSKTSLPPPKKQHKTTSISSTQTTSSSTITAPLRGVRDGYLIPLNLGTPPQQVQVYLD TGSDLTWVPCGNLTFDCIDCDDYYKSTLAPKSLGSFTPSLSSTSYRDTCGSRFCSHVHSSLDLCIVSGCSLTTVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45120			Eukaryotic aspartyl protease f...		Lus10040623 [exp]	0	1
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	5.3	0.8432
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	7.5	0.8432
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	9.2	0.8432
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	10.8	0.8414
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	11.8	0.8413
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	13.2	0.8404
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	14.2	0.8391
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	15.0	0.8388
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	15.9	0.8386
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	16.7	0.8333

Compare expression of checked genes

Lus10040623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.