Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45120 208 / 6e-65 Eukaryotic aspartyl protease family protein (.1) AT4G16563 74 / 3e-15 Eukaryotic aspartyl protease family protein (.1) AT3G52500 67 / 8e-13 Eukaryotic aspartyl protease family protein (.1) AT3G25700 63 / 1e-11 Eukaryotic aspartyl protease family protein (.1.2) AT1G25510 62 / 4e-11 Eukaryotic aspartyl protease family protein (.1) AT1G01300 62 / 5e-11 Eukaryotic aspartyl protease family protein (.1) AT3G54400 57 / 2e-09 Eukaryotic aspartyl protease family protein (.1) AT5G10770 57 / 2e-09 Eukaryotic aspartyl protease family protein (.1) AT2G03200 55 / 8e-09 Eukaryotic aspartyl protease family protein (.1) AT3G61820 54 / 2e-08 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018286 [exp] 359 / 2e-123 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 84 / 1e-18 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 81 / 2e-17 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 79 / 1e-16 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 78 / 2e-16 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10005211 [exp] 71 / 1e-14 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1) Lus10013324 [exp] 70 / 1e-14 AT3G52500 177 / 2e-53 Eukaryotic aspartyl protease family protein (.1) Lus10034270 [exp] 66 / 6e-13 AT3G25700 237 / 5e-77 Eukaryotic aspartyl protease family protein (.1.2) Lus10018825 [exp] 67 / 1e-12 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118000 [exp] 219 / 2e-69 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 211 / 4e-66 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 78 / 1e-16 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 73 / 9e-15 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 72 / 1e-14 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 72 / 2e-14 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 64 / 9e-12 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 61 / 1e-10 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 60 / 2e-10 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.018G014500 [exp] 60 / 3e-10 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10040624 pacid=23157936 polypeptide=Lus10040624 locus=Lus10040624.g ID=Lus10040624.BGIv1.0 annot-version=v1.0 ATGCACTTCACCCCGATGCTAAGCTCTTCCATGTTCCCTAATTATTACTATGTAGGCTTAGAGGCCATTACTATAGTGGGCACCAACACCACTACACCAC CAGTCTCGAGTAGTAATACTGGTGCTGTTGTGGTGGGCCCGAACGTGCCATCGAGAATGAGGGAATTTGATTCTCGACGAAACAGAGGGATGTTGATCGA CTCAGGAACCACTTACACTCACCTGCCTGAGCCGTTTTACTCCGATCTTTTAGCTATGCTCCGATCTGTGATCGGGTACCGAAGGGCTACTGCTGACGTG GAGAAAAGGGTAGGGTTTGATCTTTGTTACAGGGTCTCGATATCAAACGTTAGTAATAGTACTAGTGAGGTTGTTGCCACGGGGTTTCCAGGGGTGACGT TTCATTTCATGAACAATGCGAGCGTGGCGGTGGGGGAGGAGAATCTGTTTCAGGTGGTGGAGGCGGCAAGGAATGGGACGGTGTTGAAGTGTCTGATGAT GGAGAGTATGGAAGAGGAGTCAGAAGGTGACGGGCCGGCGGGAGTGTTTGGGAGCTTCCAGCAGCAGAATGTGGAGGTTGTTTATGACTTGGACAAGGAA AGGATTGGGTTTCGAGCTATGGACTGTGCTTCCCAGGGGCTCTTTCACGATGAAATGGCAAAGCAGTGA
AA sequence Show only first row Show all	>Lus10040624 pacid=23157936 polypeptide=Lus10040624 locus=Lus10040624.g ID=Lus10040624.BGIv1.0 annot-version=v1.0 MHFTPMLSSSMFPNYYYVGLEAITIVGTNTTTPPVSSSNTGAVVVGPNVPSRMREFDSRRNRGMLIDSGTTYTHLPEPFYSDLLAMLRSVIGYRRATADV EKRVGFDLCYRVSISNVSNSTSEVVATGFPGVTFHFMNNASVAVGEENLFQVVEAARNGTVLKCLMMESMEEESEGDGPAGVFGSFQQQNVEVVYDLDKE RIGFRAMDCASQGLFHDEMAKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45120			Eukaryotic aspartyl protease f...		Lus10040624 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	7.0	0.9481
					Lus10038463 [exp]	10.2	0.9457
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	12.6	0.9449
					Lus10009618 [exp]	14.6	0.9438
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	16.3	0.9438
					Lus10005830 [exp]	17.8	0.9438
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	19.3	0.9438
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	20.6	0.9438
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	21.8	0.9438
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	23.0	0.9438

Compare expression of checked genes

Lus10040624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.