Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72370 398 / 1e-140 AP40, RPSAA, RP40, P40 40s ribosomal protein SA (.1.2) AT3G04770 382 / 3e-134 RPSAB 40s ribosomal protein SA B (.1.2) AT3G03600 45 / 3e-05 RPS2 ribosomal protein S2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018284 [exp] 513 / 0 AT3G04770 424 / 3e-151 40s ribosomal protein SA B (.1.2) Lus10013183 [exp] 418 / 3e-148 AT3G04770 424 / 7e-151 40s ribosomal protein SA B (.1.2) Lus10037445 [exp] 415 / 4e-147 AT3G04770 413 / 9e-147 40s ribosomal protein SA B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112900 [exp] 416 / 2e-147 AT3G04770 399 / 6e-141 40s ribosomal protein SA B (.1.2) Potri.012G117600 [exp] 404 / 8e-143 AT3G04770 393 / 1e-138 40s ribosomal protein SA B (.1.2) Potri.003G071200 [exp] 403 / 4e-142 AT1G72370 384 / 1e-134 40s ribosomal protein SA (.1.2) Potri.001G164000 [exp] 402 / 5e-142 AT1G72370 386 / 9e-136 40s ribosomal protein SA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [flax] [poplar] SIS PF00318 [flax] [poplar] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Lus10040626 pacid=23157595 polypeptide=Lus10040626 locus=Lus10040626.g ID=Lus10040626.BGIv1.0 annot-version=v1.0 ATGGAGACAGCTACCGGAGCAGCGCCTCCGAGGCACCTATCTGCTAAAGAAGCCGACATTCAGAAAATGTTGGCCGGCGAAGTCCACCTCGGCACCAAAA ACTGCGACTTCCAGATGGAACGCTACGTTTTCAAGCGCCGCAACGACGGAATTCACATAATCAATCTTGGCAAGACATGGGAGAAGCTTCAGATGGCTGC CAGGGTTATCGCTGCCATTGAGAACCCGCAAGATATTATAGTCCAGTCGGCGAGGCCATATGGTCAGAGAGCTGTCCTGAAATTCGCTCAGTACACTGGC GCTACCGCCATTGCTGGAAGGCACACACCTGGTACCTTCACCAACCAGATGCAAACTTCCTTCAGTGAGCCTCGTTTGCTAATCCTTACTGACCCTAGGA CTGACCATCAGCCAATTAAGGAAGGATCCCTTGGAAACATTCCAATCATTGCTTTCTGTGACACGGATTCTCCAATGAGGTATGTGGACATTGGTATCCC TGCCAATAACAAGGGAAGGCACAGCATTGGATGCCTATTCTGGCTCTTGGCAAGAATGGTTCTTCAAATGCGTGGCACAATCCCTCAAGGCCACAAATGG GATGTGATGGTGGACTTGTTCTTCTACAGGGAGCCAGAAGAAGCCAAGAAAGAAGAAGATGAGGAAGCAGTTGGTCCAATTGAATACGGTCTTCCTCATC CGGACTACAATATGGCTGCTGGCGCTGACAACTGGAACTCGCCAGCTGATGCTGGCTGGACTGACATGGCTGCCATACCCATTGCTGCTGTCCCTGCAGC AAACTTCGCCCCAGATCAATCATGGGATGCTGCAGTTCCTCCACCGCAAGTTGCAAGCATAGGGGTTGTGGAGCCAAGTGGCAGCTGGAAATAA
AA sequence Show only first row Show all	>Lus10040626 pacid=23157595 polypeptide=Lus10040626 locus=Lus10040626.g ID=Lus10040626.BGIv1.0 annot-version=v1.0 METATGAAPPRHLSAKEADIQKMLAGEVHLGTKNCDFQMERYVFKRRNDGIHIINLGKTWEKLQMAARVIAAIENPQDIIVQSARPYGQRAVLKFAQYTG ATAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGSLGNIPIIAFCDTDSPMRYVDIGIPANNKGRHSIGCLFWLLARMVLQMRGTIPQGHKW DVMVDLFFYREPEEAKKEEDEEAVGPIEYGLPHPDYNMAAGADNWNSPADAGWTDMAAIPIAAVPAANFAPDQSWDAAVPPPQVASIGVVEPSGSWK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	1.0	0.9752
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	2.4	0.9737
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	2.4	0.9719
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	3.0	0.9612
AT3G12870			unknown protein		Lus10031198 [exp]	3.2	0.9605
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	3.2	0.9667
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	3.5	0.9694
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	4.2	0.9658
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	4.5	0.9528
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	5.3	0.9657

Compare expression of checked genes

Lus10040626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.