Plant FIBer expression Database

Lus10040629 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35640 63 / 1e-11 Trihelix Homeodomain-like superfamily protein (.1)
AT1G31310 59 / 4e-10 Trihelix hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G117500
[exp]
73 / 4e-15 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10040629 pacid=23157759 polypeptide=Lus10040629 locus=Lus10040629.g ID=Lus10040629.BGIv1.0 annot-version=v1.0
ATGCCGCCGCCTCTTCTTTCACATCACCACCATCACCACCACAACCACCGCCCTCCAACTACAGTATTGCTGCGCATACCTCTACCACCGCCACATCCAG
CTGCGCTGCCGCCGCCTCTACATCCGCCACTGCTGCAATCTCACCCTCAAGTAGCAGCCCCGCCGCCGCCACCTCCTCATCTAATAACTCACTCTCCTCA
TCATTACCAAACTCCCACAGTAGATTCCGACGACGACGATGGCGATGATACCAGCGGCGGCGGTGCCGAAGACTACTCTGACTCGCCGGCAAAGAGGATG
CGGCGATCATCACCACCACTCGGGGGCGGTGCATCGTCGTTACAACCGGCGGAGGAAATCGGCGAGGTGGGGAGGGCGATATCGAGGAGCGCGACGGTGA
TAGCGGCCGCGATTCAGGGCGGCGAGGAGAGAGAAGAGAGGAGGCACAGAGAGATAGTGAGCTTGCAGGAGAGGAGGATCAAGATTGAAGAGTCGAAGAT
GGAGATTAGCCGCCACGGCATTAACGGGTTGGTGGACGCCATTAACAACCTTTCTCATTCCATTCTCGCTCTAGCTTCTTCATCTTCAACGTCTTCTTCC
CCTCGTGATCATCATCACAAGAGTCGGAATCGGAATCAGAATCAGAATCAGAATCCTTCTCCTTCGTCCCCGAAATGA
AA sequence
>Lus10040629 pacid=23157759 polypeptide=Lus10040629 locus=Lus10040629.g ID=Lus10040629.BGIv1.0 annot-version=v1.0
MPPPLLSHHHHHHHNHRPPTTVLLRIPLPPPHPAALPPPLHPPLLQSHPQVAAPPPPPPHLITHSPHHYQTPTVDSDDDDGDDTSGGGAEDYSDSPAKRM
RRSSPPLGGGASSLQPAEEIGEVGRAISRSATVIAAAIQGGEEREERRHREIVSLQERRIKIEESKMEISRHGINGLVDAINNLSHSILALASSSSTSSS
PRDHHHKSRNRNQNQNQNPSPSSPK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31310 Trihelix hydroxyproline-rich glycoprote... Lus10040629
[exp]
0 1
AT2G02540 ZF_HD ATHB21, ZFHD4, ... ZINC FINGER HOMEODOMAIN 3, ZIN... Lus10010694
[exp]
1.4 0.9922
AT3G19500 bHLH bHLH113 basic helix-loop-helix (bHLH) ... Lus10013874
[exp]
2.0 0.9882
AT1G72570 AP2_ERF Integrase-type DNA-binding sup... Lus10015653
[exp]
3.5 0.9881
AT5G28640 ATGIF1, GIF1, A... ARABIDOPSIS GRF1-INTERACTING F... Lus10005524
[exp]
3.7 0.9781
AT2G15220 Plant basic secretory protein ... Lus10013869
[exp]
4.6 0.9761
AT2G02540 ZF_HD ATHB21, ZFHD4, ... ZINC FINGER HOMEODOMAIN 3, ZIN... Lus10010693
[exp]
7.2 0.9855
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Lus10018717
[exp]
8.9 0.9854
AT5G14070 ROXY2 Thioredoxin superfamily protei... Lus10003141
[exp]
9.8 0.9744
AT2G35160 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN ... Lus10043211
[exp]
10.4 0.9854
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10014528
[exp]
10.6 0.9843

Lus10040629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.