Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45160 1163 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT3G13870 1051 / 0 GOM8, RHD3 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) AT1G72960 1038 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018282 [exp] 1372 / 0 AT5G45160 1055 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10036195 [exp] 1330 / 0 AT5G45160 1216 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10038333 [exp] 1305 / 0 AT5G45160 1217 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10037641 [exp] 999 / 0 AT1G72960 1108 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10015623 [exp] 577 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10018281 [exp] 378 / 5e-126 AT5G45160 300 / 9e-97 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10036197 [exp] 250 / 6e-79 AT5G45160 239 / 2e-75 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112700 [exp] 1215 / 0 AT5G45160 1161 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.003G038900 [exp] 1065 / 0 AT3G13870 1220 / 0.0 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) Potri.001G201000 [exp] 1049 / 0 AT1G72960 1204 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116130 [exp] 765 / 0 AT5G45160 707 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.015G112600 [exp] 752 / 0 AT5G45160 717 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116700 [exp] 750 / 0 AT5G45160 727 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116210 [exp] 739 / 0 AT5G45160 719 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116000 [exp] 733 / 0 AT5G45160 671 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117300 [exp] 641 / 0 AT5G45160 620 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117100 [exp] 497 / 3e-168 AT5G45160 507 / 3e-172 Root hair defective 3 GTP-binding protein (RHD3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05879 [flax] [poplar] RHD3 Root hair defective 3 GTP-binding protein (RHD3)
Representative CDS sequence Show only first row Show all	>Lus10040630 pacid=23157868 polypeptide=Lus10040630 locus=Lus10040630.g ID=Lus10040630.BGIv1.0 annot-version=v1.0 ATGGCCGACGAAGAGTGCTGCTCCACCCAACTGATAGAAGGCGATGGCGAATTCAACGTCCAAGGACTCGATCGCTTCGTTTCCACCACCAAACTCGCTG ACTGTGGCCTCTCATACGCCGTTGTCGCTATCATGGGCCCTCAGAGCAGCGGGAAGAGTACCTTGATGAATCATCTCTTCTATACCAATTTCAGAGAAAT GAATGCCTTTAGCGGAAGGGGTCAAACGACAAAGGGGATTTGGATGGCCAGGTGCGTTGGCATTAAGCCGTTTACGATTGCCATGGATCTAGAAGGAACC GATGGCAGGGAAAGAGGGGAGGATGATACTACTTTCGAGAAACAAAGTGCACTTTTTGCTTTGGCGGTTGCTGATATTGTGATAATAAACATGTGGTGCC ATGACATTGGCCGGGAGCAGGCGGCAAACAAGCCCCTCCTAAAAACAGTGTTTCAGGTTATGATGCGTTTGTTCAGCCCTCGCAAAACTACTTTGCTGTT TATAATACGTGATAAAACAAAGACCCCGCTTGAATATCTTGAACCTATTCTTAGAGAGGATGTTCAGAAGATATGGGATTCAGTTCCTAAACCTCAGGCC CACCAAGAAACTCCTTTGAGTGAATTTTTCAATGTGGACGTCACTGCACTATCCAGCTTTGAAGAGAAGGAGGAACAATTTAAGGCCCAGGTTGCTGAAC TGAGACAGCGGTTTTTCCATTCCATTTCTCCTGGAGGACTGGCTGGTGATAGAAGGGGAGTCGTTCCTGCATCAGGGTTTTCATTTAGTTCGCAACAAAT ATGGAGTGTTATAAAGGAGAATAAGGATCTGGATCTCCCTGCCCACAAGGTGATGGTTGCAACAGTTCGATGTGGAGAAATTGCCAATGAAAAGCTTCGT AGCTTGAAATCTGACGAGGGATGGTTGGAACTGGAGGAAGCCGTTGAAGCTGGTCCAGTGTCGGGATTTGGGAGAAATGTCAGCTCGATCCTGGGAAAAT ATCTTGCCGAGTATGAGATGGAGGCAACCTATTTTGATGAAGGTGTGAGAAATGCAAAACGAGAAGAGCTAGAAACAAAAGCATTGGACCTGGTTCACCC AGTCTATGTTGCGCTTTTGGGACATATACGTCATCAAGCAGTTGACAACTTCAAGAGTAAGCTAGAGCAGTCACTGACCAGAGGCGAAGGTTTTGCTGCT TCAGTTCGTATTTGTAGAGAGTCTTGCCTTGCTGAGTTTGATAAAGGATGCAAAGATGCTTCATTAAAACAGGCTGATTGGGATACTTCAAAAGTTCGGG AAAAGCTTTACCGTGATATTGAGGCATATGCTTCATCTGTATGCAGTGCCAAATTATCTGAAATGACTGCCAAGTATGAGAATAAACTCACCGAAGCACT GAGTCATCCTGTAGAATCCCTCTTTGAATCTGGTGAAAAGGAGACATGGGCTTCAGTCAGAAAGCTTCTTAAACGGGAAACAGATGCTGCTGTAGCAGAG TATTCCACTGCGGTTGCTGGCTTCGAATTGGATGATACTACAGTTGATGCACAGATGCAAAACCTGAGGGGCTATGCAAGAGATGTAGTGGAGAAAAAAG CAAGAGAAGATGCGGGGAAGGTTTTGATACGTATGAAGGATAGATTTTCCACAGTTTTCAACCACGACAATGATTCAATGCCACGGGTTTGGACAGGAAA AGAGGACATCAGAGCCATTACTAAGGATGCACGATCTGCGTCCTTGAAACTTCTATCAGTCATGGCTGCTGCACGTTTGGATGAAAAAACAGATAAAATT GAAAACTTACTTGTTTCCTCCCTAATGGATGGAACTATGGTTGCGCAATCTTCACAAAACAGAGGTGTAGGAACTTCTGCAGACCTTCTTGCATCAAGTA CCTGGGAAGAGGTTTCTCCAAAAGATACTCTGATCACACCAGTTCAGTGCAAGTCTTTGTGGAGGCAGTTCAAAGCAGAGACAGAGTACACAGTTACTCA AGCGATCTCCGCTCAGGATGCTCACAAACGTAATAACAACTGGTTACCTCCTCCATGGGCTATTGCTGCAATGCTCATCCTTGGTTTCAACGAGCTCATG CTTCTATTAAAGAACCCTCTATATCTAATGGTCCTCTTCGTCGCGTACTTGCTTTTCAAGGCCCTATGGGTACAACTCGACGTTGCTGGGCAGTTTAGGC ACGGCGCTGTGGCTGGGATACTGTCTATCTCATCCAAGTTTGTTCCTACCATCATGAATCTTTTGAAGCGACTCGCTGAAGAGGCTCAAGGTCAAGGTCA AGGTGAAGTTCAAATGGCTACGGTCCCAAGACCACAGTCTAGCTCAAATCCAACTTCGTCGGTATCCTCCAATATCTCATCAGTGTCTGATAATGGGATG GAGTACTCGAGCCCGAACCAGATGCATAGGCGAAGTACCAGAGCTTCGGAAGTAGAGGCAGAGCAATCCTGA
AA sequence Show only first row Show all	>Lus10040630 pacid=23157868 polypeptide=Lus10040630 locus=Lus10040630.g ID=Lus10040630.BGIv1.0 annot-version=v1.0 MADEECCSTQLIEGDGEFNVQGLDRFVSTTKLADCGLSYAVVAIMGPQSSGKSTLMNHLFYTNFREMNAFSGRGQTTKGIWMARCVGIKPFTIAMDLEGT DGRERGEDDTTFEKQSALFALAVADIVIINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFIIRDKTKTPLEYLEPILREDVQKIWDSVPKPQA HQETPLSEFFNVDVTALSSFEEKEEQFKAQVAELRQRFFHSISPGGLAGDRRGVVPASGFSFSSQQIWSVIKENKDLDLPAHKVMVATVRCGEIANEKLR SLKSDEGWLELEEAVEAGPVSGFGRNVSSILGKYLAEYEMEATYFDEGVRNAKREELETKALDLVHPVYVALLGHIRHQAVDNFKSKLEQSLTRGEGFAA SVRICRESCLAEFDKGCKDASLKQADWDTSKVREKLYRDIEAYASSVCSAKLSEMTAKYENKLTEALSHPVESLFESGEKETWASVRKLLKRETDAAVAE YSTAVAGFELDDTTVDAQMQNLRGYARDVVEKKAREDAGKVLIRMKDRFSTVFNHDNDSMPRVWTGKEDIRAITKDARSASLKLLSVMAAARLDEKTDKI ENLLVSSLMDGTMVAQSSQNRGVGTSADLLASSTWEEVSPKDTLITPVQCKSLWRQFKAETEYTVTQAISAQDAHKRNNNWLPPPWAIAAMLILGFNELM LLLKNPLYLMVLFVAYLLFKALWVQLDVAGQFRHGAVAGILSISSKFVPTIMNLLKRLAEEAQGQGQGEVQMATVPRPQSSSNPTSSVSSNISSVSDNGM EYSSPNQMHRRSTRASEVEAEQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45160			Root hair defective 3 GTP-bind...		Lus10040630 [exp]	0	1
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10021401 [exp]	1.4	0.8672
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004939 [exp]	6.2	0.8341
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	10.2	0.8151
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	12.7	0.7978
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	13.4	0.8014
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	15.7	0.8095
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10033382 [exp]	16.3	0.7359
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	16.4	0.8079
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10035737 [exp]	20.0	0.8085
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	20.9	0.8240

Compare expression of checked genes

Lus10040630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.