Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45170 424 / 2e-148 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 86 / 2e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 45 / 3e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018280 [exp] 570 / 0 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10000232 [exp] 198 / 4e-63 AT5G45170 82 / 2e-19 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 87 / 6e-19 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10013663 [exp] 87 / 7e-19 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10023149 [exp] 52 / 2e-07 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10000633 [exp] 51 / 7e-07 AT4G39970 427 / 1e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112500 [exp] 429 / 7e-150 AT5G45170 386 / 2e-133 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G088500 [exp] 82 / 2e-17 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G095200 [exp] 54 / 4e-08 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040631 pacid=23157901 polypeptide=Lus10040631 locus=Lus10040631.g ID=Lus10040631.BGIv1.0 annot-version=v1.0 ATGGAAGCGGCTTCAGCTACTGCTTCTTCTTCTTCTTCCTCAATTCTTCACACCTTCAACCGCACTATAAACCATGGCAGATTCTCTCCACGGAACAACA ACACCAATTACTATTCGCCCCCTTCATTTCCCTTCACTTCCCCGAGAATATTCAACCACCCGCCCAGGAAATGTTCGAAGCCGTCAAATAGGTTCACCGC TTTCAGCTCCTCGCCCTACACCTCAATTCCACCTGAACAAAACCCACCTCCGGAGCTTGCTATTCTCCTTGAAGTTGATGGGGTCCTTATGGATGCTTAT CGCTTGGGGAATCGCCAGGCTTTTAATGTAGCATTCCGGAAGCTAGGGCTTGACTGTGCCAATTGGACTGAACCTATCTACATGGACCTTCTAAGGAAGA GCACCGGTGATGAGGAAAGAATGCTGCTTTTGTATTTTAACCGGATTGGTTGGCCTACCTCTTTGCCAACTAGTGAGAAAGAAACGTTCATGAAAAATGT TCTTCAAGAAAAGAGAAAAGCACTGGATGAATTTGCGACATCAGAAGGTTCACCTCTGCGACCAGGAGTTGAAGTGTTTGTGGATGATGCATATGATGAA GGAATACCTGTGGTTATTGTGACAAGTTATGGTAAAAGTGAGGAGAAAGTAGCCAGGTCCATTATAAGCAAACTCGGGCAGTCGAGAATACCCAAGATCA AGATTGTTGGAAACCAGGAAATAGAACAGAGTTTTTATGGACAACTTGTTCTCGGCAAAGGAATTTCCTCTGGTTTGGATGAGCAACTAGCCAGGGAAGT GAAAAAAGCAGCTTCGGCAGAGAAACAGAGGGTCGCTGAAGAAGTAGCATCGTTACTGAAATTAAAAGTAGAGCTAGATACGAGTTCATCTGAGAGTCTA GATAAGGTGGTAGCTGCGCTACGTGCAGGGGCAGAGACTGCCGGTCTTCCTGTCCAAAATTGTGTCCTAATTAGCGGAAACCAATCTGGAGTTGCTGCAG CCAATCGAATCTGCATGCCATGCGTAGTTGTGCGGAGCAGTTTGACAGCTAGAGCTGAGTTCCCTTTAGCAAATGGCATCATGGACGGGTTTGGAGGTGC AGATTTGACGGTTTCTAAACTGCGAAAGAAGCGATGGTCGGGTTCTCAAGAGATGTAG
AA sequence Show only first row Show all	>Lus10040631 pacid=23157901 polypeptide=Lus10040631 locus=Lus10040631.g ID=Lus10040631.BGIv1.0 annot-version=v1.0 MEAASATASSSSSSILHTFNRTINHGRFSPRNNNTNYYSPPSFPFTSPRIFNHPPRKCSKPSNRFTAFSSSPYTSIPPEQNPPPELAILLEVDGVLMDAY RLGNRQAFNVAFRKLGLDCANWTEPIYMDLLRKSTGDEERMLLLYFNRIGWPTSLPTSEKETFMKNVLQEKRKALDEFATSEGSPLRPGVEVFVDDAYDE GIPVVIVTSYGKSEEKVARSIISKLGQSRIPKIKIVGNQEIEQSFYGQLVLGKGISSGLDEQLAREVKKAASAEKQRVAEEVASLLKLKVELDTSSSESL DKVVAALRAGAETAGLPVQNCVLISGNQSGVAAANRICMPCVVVRSSLTARAEFPLANGIMDGFGGADLTVSKLRKKRWSGSQEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10040631 [exp]	0	1
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	6.2	0.8946
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	9.6	0.8788
AT4G27620			unknown protein		Lus10028872 [exp]	10.0	0.8324
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	10.5	0.8752
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	16.4	0.8459
AT3G51510			unknown protein		Lus10033303 [exp]	22.3	0.8595
AT4G38490			unknown protein		Lus10025084 [exp]	25.1	0.7898
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	26.1	0.8389
AT4G14605			Mitochondrial transcription te...		Lus10035227 [exp]	28.5	0.8499
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	28.8	0.8359

Compare expression of checked genes

Lus10040631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.