Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61680 132 / 1e-36 ATTPS14 terpene synthase 14 (.1.2) AT4G16730 74 / 5e-16 AtTPS02 terpene synthase 02 (.1) AT4G16740 67 / 2e-13 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 59 / 8e-11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 59 / 2e-10 AtTPS10 terpene synthase 10 (.1) AT3G25830 54 / 4e-09 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 54 / 4e-09 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT1G61120 43 / 2e-05 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT1G79460 41 / 0.0002 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000231 [exp] 257 / 4e-85 AT1G61680 348 / 8e-115 terpene synthase 14 (.1.2) Lus10018280 [exp] 253 / 2e-80 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018392 [exp] 187 / 9e-57 AT1G61680 350 / 1e-113 terpene synthase 14 (.1.2) Lus10035240 [exp] 167 / 1e-49 AT1G61680 372 / 5e-123 terpene synthase 14 (.1.2) Lus10018390 [exp] 71 / 1e-14 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10007624 [exp] 67 / 2e-13 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10012312 [exp] 60 / 5e-11 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006356 [exp] 60 / 7e-11 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10007621 [exp] 54 / 5e-10 AT1G61680 56 / 2e-10 terpene synthase 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030400 [exp] 134 / 1e-37 AT1G61680 466 / 8e-160 terpene synthase 14 (.1.2) Potri.004G030200 [exp] 129 / 7e-36 AT1G61680 465 / 2e-159 terpene synthase 14 (.1.2) Potri.011G032300 [exp] 87 / 1e-20 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.019G023020 [exp] 71 / 6e-15 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 69 / 3e-14 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 68 / 5e-14 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.017G041700 [exp] 66 / 3e-13 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 64 / 2e-12 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.019G022338 [exp] 64 / 2e-12 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G031800 [exp] 64 / 3e-12 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10040632 pacid=23157845 polypeptide=Lus10040632 locus=Lus10040632.g ID=Lus10040632.BGIv1.0 annot-version=v1.0 ATGGCTCTCCATGAAGTCACCAACCAATTTGGGTTCAAAGTATACAAAAGACATGGATACGATCCAACACACTCCCTGCAGCAAACATGGGCAAAACTGT TCAAAGCATTTCTAGTTGAAGCCAAATGGTTCCACTCAAGAAAGTGTCCAAAGGCAGAAGAGTACTTGAAGAATGGGAAAATGAGTTCAGGTGTACAATT AGTGCTCATTCACCTCTTCTTCCTCTTAGGTCATGGCCTCACAAAGAGAATTGTGGACTTACTCGATGGTGATAATCCTTCTGTTATTTCATCGGTCGCA AACATTTTTCGGTTATGTGACGATCTCTCAACAATGGACAAAAAGCAAGATGAGTATGGCGGGTCTTATGTGGATTGCAACATGAAGGAGCATCCCGAGT CAACGTTGCATGGTACGAGAGAGCGTGTGATGGAGATGATTGAAGATACGTGGAAAAGCAATTAA
AA sequence Show only first row Show all	>Lus10040632 pacid=23157845 polypeptide=Lus10040632 locus=Lus10040632.g ID=Lus10040632.BGIv1.0 annot-version=v1.0 MALHEVTNQFGFKVYKRHGYDPTHSLQQTWAKLFKAFLVEAKWFHSRKCPKAEEYLKNGKMSSGVQLVLIHLFFLLGHGLTKRIVDLLDGDNPSVISSVA NIFRLCDDLSTMDKKQDEYGGSYVDCNMKEHPESTLHGTRERVMEMIEDTWKSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	0	1
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	1.4	1.0000
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	2.0	1.0000
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	2.8	0.9864
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	3.0	0.9939
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	3.9	0.9703
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	4.2	0.9367
					Lus10000749 [exp]	5.3	0.9273
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	5.5	0.8316
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	5.7	0.9248
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024251 [exp]	6.7	0.8130

Compare expression of checked genes

Lus10040632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.