Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61520 587 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28460 578 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28370 537 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 264 / 1e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 253 / 7e-75 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 253 / 1e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 244 / 5e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 243 / 1e-69 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 241 / 2e-69 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64583 237 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027914 [exp] 248 / 2e-71 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 247 / 6e-71 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 250 / 2e-70 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 249 / 3e-70 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000364 [exp] 243 / 9e-70 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 245 / 1e-69 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 242 / 2e-68 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 245 / 3e-68 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 241 / 1e-67 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090400 [exp] 805 / 0 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 276 / 3e-82 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 258 / 3e-76 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 257 / 6e-76 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 256 / 1e-75 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 255 / 2e-75 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 257 / 3e-75 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 253 / 2e-74 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 252 / 4e-74 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 249 / 7e-73 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040633 pacid=23157941 polypeptide=Lus10040633 locus=Lus10040633.g ID=Lus10040633.BGIv1.0 annot-version=v1.0 ATGGCGATCTGCGCGTCCAACACTCCCATGGTCACCCGCCTCGTCCAAATCCGCACCTCCACCTATTGCCTCTCTTTGCTACAACAGCGCCGCCACTCAA CTGAGCCGTTGTCGCAAGGCGTCCCGATCATGAAGCAAGCTCTGGAGCTTCTGTTGAGGCCTGCAAACGAATGGGACGCCGCAAAACTCAGCCGAATCCT CTTCTCCAATGCATCCTCCTCTTCCCCTTTCTTTCTTTTCAAAATCGCCCGCCGCTTGCCGTCTTCTACTTCAGCTCTCCGATTTCTGCAATTCCTCAGG AACAACAATTCACCGTGGTCGTCTCTCGATCCCCAGTCTCTCTCCCACCCGTTTCAAGCCGTCTTTGAGCTTGCTAGCAAGGAAGCTAATTCGGTCGAGA GCCTCTCTCAAGTTTATAAAGCTTCCAAAGAGTTGGGTATCCAACTCTCTCCCAATTCGGCTGCCATTCTCCTTCGCTGCCTCGGAAGAAACGGGATGAT GACTGATGCTAAGTTCTTCTACGATAGCTTTGATGATTCGGTTAGAAATGCTCATGTTCGTAATGTGTGGATCAAGTTGTTGTTACAAGCCGGGCGTTTT GATGATGCGCTCAAGGTGCTCGACGAAATGCTTCAACCTGATGACTCAATTGCGATGGAGTTTTTCACCTTTTTGTTAGCCAGGGAGCGACATGGAAGGG GTATAAGCAAGGAAGAGATTATTGGGTTGGTAATGAGATTCGCTAAGCTTGGAATCTTTCCTACCCCAATTTGGATGACTCGATTTGTTACAATACTGTC TTGCAATGGGAAGATAAAAGCTGCTTGGGATTTTTTACATGTGCTGATGAAGTTGGGTGCTCCAATTGATGCAAGCCCTTGCAATGCTTTATTGACAGGG TTAGAGAAGGAGATGGACACCAAGAGAATGAATGAACTCATGGTGAAGATGAAGGAATCAGATATCCAGCCCGATGTTGTGACTTTCGGAATTCTCATGA ATCATTTGTGTAAGCATAAGAGAATTGATCAGGCACTTGAAGTTCTTGAAAAGATGAGCATGGACGAAATTGCAGTTGAGCCCGACGTTGTTATCTATAA TACCTTAATCGACGGATTCTCAAAAATGGGTAGGCAAGAAGAAGCATTGAAGTTGGTGGAACGGATGAAATCTCAACAAGGTTGTTCTCCTAATACAGTC ACCTACAATTGCTTGATTGATGGGTTTTGTAAAGCAGGTGATATAGACAGGGGTTTGAAATTGTTCGAACAGATGAAAGAAACCGGAGTCATCCCAAATG CCATCACTGTGAACACGTTGGTCCATGGAATGTGCAGATTTGGACGGACAAGTAATGCTGTTCAGTTCTTCTACGAGATGAAAAGTAACGGTCTTTCAGG AACTGCTGTTAGTTATACCTCGTTGATCGATGCTTTCTGCAAAGTGAATAACATCGAACGGGCAATGCAAATCTTTGATGAAATGGTGAGGGATGGATGG TCTCCTGATGCTTTTGTTTACTACGCCATGATCTCTGGTTTGAGTCGAGCCGGGAGGATGCTCGACGCCTTGGAATTCTTAACTAAGATGAAAATGGCAG GGTTTAAACCCGATCTTGTGTGCTACAATGTCTTGATTTCCGGTCTTTTGAACAAGAAAAAAACAGATAAAGCTTTCGAGATCTTCAAAGAAATGGAGGA TGCCGGTGTAAGGCCCGACGGTGTGACGTACAACACTCTGATTGCTTACCATGGAAAAGTCGGCAACTTTATGGAATCTCGTAGATTGCTGAGAAAGATG AGTAAAGAGGGTCACGTTCCTACCGTGGCTACGTCTGGGGCTCTAATCCATGCTTACTGTGTAAACGATAGAGTCAATGAAGCGATGTCGCTTTTCAAGG AACTTCGTGCTTCGTCGAAGGTTGCTCCGAACACTGTGATATACAACATTCTGATAGACTGCTTGTGCAAGAAGAATGATATTCAGCAGGCGCTTTCCTT GATGGATGATATGGAGCTTAAGGATGTGAAGCCGACTGCTAACACGTTCAATGCATTGTTTAGAGGCTTAAGGGAGAATAAGTTAGTTGATAAAGCTTTT GAGTTGATGGATAGAATGATAAAGGAGGGTTGTAACCCTGATTTCATCACGATGGAGATCCTCACGGAGTGGCTTTCGGCTGTTGGTGAAACGGATAAGT TGAGAAGATTTGTTGAAGGCTATTCTGTCTCAGGTGCTGCTGAACAAACATCCGCTGCTGCTTAA
AA sequence Show only first row Show all	>Lus10040633 pacid=23157941 polypeptide=Lus10040633 locus=Lus10040633.g ID=Lus10040633.BGIv1.0 annot-version=v1.0 MAICASNTPMVTRLVQIRTSTYCLSLLQQRRHSTEPLSQGVPIMKQALELLLRPANEWDAAKLSRILFSNASSSSPFFLFKIARRLPSSTSALRFLQFLR NNNSPWSSLDPQSLSHPFQAVFELASKEANSVESLSQVYKASKELGIQLSPNSAAILLRCLGRNGMMTDAKFFYDSFDDSVRNAHVRNVWIKLLLQAGRF DDALKVLDEMLQPDDSIAMEFFTFLLARERHGRGISKEEIIGLVMRFAKLGIFPTPIWMTRFVTILSCNGKIKAAWDFLHVLMKLGAPIDASPCNALLTG LEKEMDTKRMNELMVKMKESDIQPDVVTFGILMNHLCKHKRIDQALEVLEKMSMDEIAVEPDVVIYNTLIDGFSKMGRQEEALKLVERMKSQQGCSPNTV TYNCLIDGFCKAGDIDRGLKLFEQMKETGVIPNAITVNTLVHGMCRFGRTSNAVQFFYEMKSNGLSGTAVSYTSLIDAFCKVNNIERAMQIFDEMVRDGW SPDAFVYYAMISGLSRAGRMLDALEFLTKMKMAGFKPDLVCYNVLISGLLNKKKTDKAFEIFKEMEDAGVRPDGVTYNTLIAYHGKVGNFMESRRLLRKM SKEGHVPTVATSGALIHAYCVNDRVNEAMSLFKELRASSKVAPNTVIYNILIDCLCKKNDIQQALSLMDDMELKDVKPTANTFNALFRGLRENKLVDKAF ELMDRMIKEGCNPDFITMEILTEWLSAVGETDKLRRFVEGYSVSGAAEQTSAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61520			Pentatricopeptide repeat (PPR)...		Lus10040633 [exp]	0	1
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	7.4	0.8198
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	10.8	0.8527
AT1G71350			eukaryotic translation initiat...		Lus10034314 [exp]	14.5	0.7958
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	16.2	0.8088
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	16.4	0.8345
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	23.2	0.8129
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	25.9	0.8280
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	26.0	0.8179
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10012118 [exp]	27.2	0.7769
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	29.2	0.7722

Compare expression of checked genes

Lus10040633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.