Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14050 705 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 375 / 5e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 372 / 6e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 372 / 8e-120 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G29760 366 / 3e-118 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 363 / 1e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 363 / 8e-117 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33170 366 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 362 / 2e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 354 / 8e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018278 [exp] 1087 / 0 AT4G14050 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 366 / 5e-119 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 362 / 3e-117 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 359 / 1e-116 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001617 [exp] 355 / 8e-115 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 354 / 3e-114 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 363 / 2e-112 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038741 [exp] 349 / 3e-112 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012971 [exp] 347 / 5e-111 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321700 [exp] 812 / 0 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 400 / 4e-131 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 384 / 2e-124 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 369 / 4e-121 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 375 / 6e-121 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G091600 [exp] 369 / 1e-119 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 367 / 3e-119 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 363 / 3e-118 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 360 / 4e-117 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 368 / 9e-116 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040634 pacid=23157899 polypeptide=Lus10040634 locus=Lus10040634.g ID=Lus10040634.BGIv1.0 annot-version=v1.0 ATGGTAGTTTCTCGCAACCTTTCGCAGCTACGCCTCTGCGCAAAATCCCATATCCCATCATCGGTCAAGCAGCTCCATCCTCAACTCATCAAGAGCGGCA TCAACGACTGCATTCCATTAGCCAACACCTTGCTCGACGCATACGGAAAATGTGGCCATGTTCAGGATGCTCGCCAAGTGTTCGACGAAATGCCCAACCG AGACCATGTCTCTTGGGCTTCCATTCTCACCGCGCACAATCAGGCCAACCTCCCCGCCGCGACTCTCTCCATTTTCCCGTCCATGCTGTCTCGTGACGGT TTGCTACCTGACCATTTCGTGTACGCTACTCTGGTCAAGTCTTGTGCCGGGTTGTTTGCCATAAGGCAAGGGAAGCAGGTACACGCTCAGTTTGTTGTAT CTCCTTATAACCATGATGACGTTGTTAAATCGTCTTTGGTTGACCTGTATGCCAAGTGTGGATTACCTTTAGCAGCTCGGAGTGTGTTTGATTCGATTAT GGTGAAGTCCTCGATTTCGTGGACTTCGGTTATATCAGGGTATGCTAGGAGTGGGTTGAAATCAGAGGGAATGGAGCTCTTGTTGAGTACACCTTACAGG AATTTGTATTCTTGGACTGCGTTGATATCTGGATTAGTGCAAAGTGGGAACACTGCTGATGCTTCTCTTTTGTTCATTGAAATGAGAAGAGATGGGATTG AGATAGTGGATCCATTAGTTGTTTCGACTGTGGTTGCTGCTTGTGCTAATTTGGCTTCATTAGAGTTTGGGAAGCAAGTTCATGGCTTAGTTGTGGCACT CGGGTATGGATCTTGCTTGTTTATAGATAATGCACTTGTTGACATGTATGCCAAATGTAGTGATCTTTTGTCAGCCAGGAGAATTTTTGATGCAATGATT TGGAGGGATGTTGTATCCTGGACTTCTCTCATAGTCGGGGAGGCACAACATGGAAAAGCCATGGGGATTACTCCATCCTTGCAACACTTTACATGTTTAT TGGATCTCTTCAGTCGGTCTGGGGACCTTGTTGAGGCTGAGAATTTAATCTCGACAATGCCATTTGAGCCTGATGAGCCTACATGGGCAGCTTTATTGAG TTCATGCAGGAAATATGGGAACAAACAAGTTGGAGTTAGAATTGCTGATCGTCTACTGAGCTTAAACCCACAGGACTATTCATCCTATATCTTACTATCT AATGTCTATGCTGGAGCTGGAATGTGGGAACGTGTTTCAATGGTGAGGAAATTGATAACAAGTTTGGAGGTGAAAAAAGAACCAGGTTACAGTTGCATTA CCCTTGGAAAAGAGAGGCAAGTGTTTTACGCTGGGGAGACGTTTGATCCTGCACTGAAAAGTGAGATACTTTATTTGCTTAATGAACTGGAGAAAGAGAT GAGACGGAGAGGTTATTTGCCCGATACTAGTTGTGTTCTAATGGATATGGAGGAACAGGAGAAAGAAAGGCAACTATTTTGGCACAGTGAAAGGATAGCC GTGGCTTATGGACTACTCAGAGCTGTTCCAAAGACTGTGATAAGGATTGTGAAAAATCTCCGTGTATGCGGTGACTGCCACAATGTTCTTAAACTACTTA GCAGTATTGTTGACCGAGAGATAATTGTCCGAGATGCAACCCGCTATCATCATTTTGCTAATGGAAAGTGTTCTTGCAATGATTTCTGGTGA
AA sequence Show only first row Show all	>Lus10040634 pacid=23157899 polypeptide=Lus10040634 locus=Lus10040634.g ID=Lus10040634.BGIv1.0 annot-version=v1.0 MVVSRNLSQLRLCAKSHIPSSVKQLHPQLIKSGINDCIPLANTLLDAYGKCGHVQDARQVFDEMPNRDHVSWASILTAHNQANLPAATLSIFPSMLSRDG LLPDHFVYATLVKSCAGLFAIRQGKQVHAQFVVSPYNHDDVVKSSLVDLYAKCGLPLAARSVFDSIMVKSSISWTSVISGYARSGLKSEGMELLLSTPYR NLYSWTALISGLVQSGNTADASLLFIEMRRDGIEIVDPLVVSTVVAACANLASLEFGKQVHGLVVALGYGSCLFIDNALVDMYAKCSDLLSARRIFDAMI WRDVVSWTSLIVGEAQHGKAMGITPSLQHFTCLLDLFSRSGDLVEAENLISTMPFEPDEPTWAALLSSCRKYGNKQVGVRIADRLLSLNPQDYSSYILLS NVYAGAGMWERVSMVRKLITSLEVKKEPGYSCITLGKERQVFYAGETFDPALKSEILYLLNELEKEMRRRGYLPDTSCVLMDMEEQEKERQLFWHSERIA VAYGLLRAVPKTVIRIVKNLRVCGDCHNVLKLLSSIVDREIIVRDATRYHHFANGKCSCNDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	0	1
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	1.0	0.8706
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	1.7	0.8531
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	3.2	0.8605
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	3.5	0.8431
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10012118 [exp]	6.0	0.8177
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	6.3	0.8205
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	6.5	0.8341
AT3G61520			Pentatricopeptide repeat (PPR)...		Lus10040633 [exp]	7.4	0.8198
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	8.9	0.8339
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	9.0	0.8280

Compare expression of checked genes

Lus10040634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.