Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19610 671 / 0 nucleotide binding;nucleic acid binding;RNA binding (.1) AT5G08695 499 / 9e-168 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G05720 93 / 1e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G20030 69 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 65 / 3e-12 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G07350 64 / 5e-12 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G34110 67 / 4e-11 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G46020 59 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G61030 62 / 5e-10 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT2G36660 62 / 1e-09 PAB7 poly(A) binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018277 [exp] 1247 / 0 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10013306 [exp] 64 / 6e-12 AT5G06210 94 / 3e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002689 [exp] 69 / 8e-12 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10028400 [exp] 64 / 2e-11 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10006936 [exp] 62 / 5e-11 AT4G20030 137 / 4e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10021351 [exp] 66 / 9e-11 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040705 [exp] 64 / 1e-10 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041854 [exp] 62 / 2e-10 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10018202 [exp] 64 / 3e-10 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G149600 [exp] 849 / 0 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.001G081000 [exp] 164 / 3e-47 AT4G19610 105 / 3e-27 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.009G163400 [exp] 77 / 2e-14 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 75 / 6e-14 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G212400 [exp] 72 / 8e-13 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G208500 [exp] 64 / 7e-12 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 67 / 5e-11 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G079200 [exp] 66 / 6e-11 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G074900 [exp] 62 / 7e-11 AT4G20030 164 / 2e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 65 / 1e-10 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040636 pacid=23157807 polypeptide=Lus10040636 locus=Lus10040636.g ID=Lus10040636.BGIv1.0 annot-version=v1.0 ATGACAGTGAATTACAAGCTCAGACTCGGACAGGGAACAAAGCCACTGTCTAGAATATGCGTGAAGAATTTGGCGAAATATGTGACGGAGGACCAATTGC GGGAACACTTTTCTCTGAAAGGAGAAATAACAGATGCCAAGCTAATGCGGACTAAAGAAGGTAAAAGTAGGCAATTTGCTTTCATTGGTTTCCGTAGCGA AGCTGAAGCTGAAGAAGCTATTAGACACTTCAATAAATCTTTCCTCGGTACTTCTAGAATTGAATGCGAGATTGCCCGAAAGCAAGGGGATCCAAATATT CCTCGTCCATGGAGTCGTCATTCAGTAAATAAAAGTGGAGAAGTAATTGCAGATGAAAACAAAGCTTCAGGAGCTGGTAGTTTGAAGGTTAAGGGTCCCA AAGGGGATGCCAAGCATGATCAGGAAGGCAATGAGACTGATGACCCGAAACTCAGAGAATTTCTTGAGGCCATGAAACCACGAGCTAAGTCAAAATTGTG GTCAGATGACACCCCACTTCCTACAGTGCCTAACCAAAATGGCAAAGTTGGCAAAAAGGTTAGTCAAACGGAGAAAGGAAGTAAAGAGAAGTTGGGTACA TTAGATGTCGAGACTAAGGAAAGTGCCACTGAAATATTGAATATCGTTAATAACGAAGTCATCTCAGATACAGACTATTTGAAAAGTAAAATGAAGAAAA ATTGGTCAGATTCAGACAGTGATGATGATCTGGAAGGTGAAGACCATGGTGATAAAAAGGTCAGTCATTCACCTAATGAAAGACTTGGTGAGAATGATGG GATGGTAGAAGATGAACCGATGATGGTGAATGAAGACGATGGAAAATCTGTTCACGCTAAAACATCATCAAATGTGGAAGACGAGGCTTTTGAGGCTGGT CGGTTGTTTATAAGAAATCTACCATACACAGCAACTGAGGAAGAACTGGAAGAGCACTTTAGCAAGATTGGCGATACGTCAGAGGTCCATCTTGTTGTTG ACAAGGAGACAAAGCAGTCAAAAGGCTTTGCATATGTTCGCTACGCACGACCAGATTCTGCTACTAGGGCATTGGAGGAATTGGACAATACAATTTTCCA AGGCAGACTGTTGCATGTCATGCCAGCAAAAAAGAAGCATACATCAGATAACTTCGAGGTTGACCAAGGCTTAAAAACTGTTAAGCAGCGGAGGGAAGAT CAAAAGAAGGAAGCTGAAGCTGGTGGAGATACAAGAGCGTGGAATAGTTTGTTCATGCGCAGTGATACAGTTGTTGAGAACATCGCCCGGAGACATGGTG TGAGTAAAAGTGAGATACTTGACCCATCAGCTGATGATCTTGCTGTACGTGTCGCTTTGGGAGAAACTCAAGTACTCGCAGAGACAAAAAAAGCTCTTGC GACTGCCGGAGTAAATGTAAAATCTTTGGAGGAAATTGCTGCTGGCAATACTGATGGCTTGAAAAGGAGCAAAGATGTTCTTTTGGTGAAGAACTTGCCA TATGCCTCTTCTGAAGCTGAACTAGCTAAGATGTTTGGGAAATTTGGTACTCTCGACAAAATTATTCTTCCCCCAACGAAGACAATGGGCCTGGTTGTTT TTCTCCAACCTTCTGATGCACGTGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCGCTATATTTGGAGTGGGCTCCAGCTGATATTCT CAGTCCAAGTCCAACTTCTAAGGGCGATTATGCTAGTATTACAGCTGTTGGTCAAGATGATATAAAGAGGGTGATACTGGAGCAAACTATTGAAGGAACA ACTGAAATTGATATAGATCCAGACAGAACTGAGATAACCAAGCATAAAAAAAACGAGGTGTACGTCTCAAAGGGGTTTGGCTTTTTGGAGTTTGACTCAG TGGAGACGGCAGCAAATATCTGCAGAGATTTGCAGGGAACAATTTTGGATGGACATGCCCTCATCCTGCAACTTTGTCACGCCGGTAAAGATGAGCAGCA GGTGAAGAAAAAGGTTGGGAAAGATACAAGTTCTACAAAACTGCTCGTCAGAAATGTGGCGTTTGAAGCAACAGAAAAGGACCTTAGACAACTATTCAGC CCATTTGGCCAGAATCTGACGAGAGCCAAGGAAGGGGAGACCCTGGAAGAGCTACGAGAACGAACCACTGCTCAGTTCGCCGATGAAGAAAACTCAACCA AATCTTCAAAGAAGAGGAAGAACATGGCCGTCTTGGATGAAGGAACGATGAAGTTTCAACGGTTTGAGGATTAA
AA sequence Show only first row Show all	>Lus10040636 pacid=23157807 polypeptide=Lus10040636 locus=Lus10040636.g ID=Lus10040636.BGIv1.0 annot-version=v1.0 MTVNYKLRLGQGTKPLSRICVKNLAKYVTEDQLREHFSLKGEITDAKLMRTKEGKSRQFAFIGFRSEAEAEEAIRHFNKSFLGTSRIECEIARKQGDPNI PRPWSRHSVNKSGEVIADENKASGAGSLKVKGPKGDAKHDQEGNETDDPKLREFLEAMKPRAKSKLWSDDTPLPTVPNQNGKVGKKVSQTEKGSKEKLGT LDVETKESATEILNIVNNEVISDTDYLKSKMKKNWSDSDSDDDLEGEDHGDKKVSHSPNERLGENDGMVEDEPMMVNEDDGKSVHAKTSSNVEDEAFEAG RLFIRNLPYTATEEELEEHFSKIGDTSEVHLVVDKETKQSKGFAYVRYARPDSATRALEELDNTIFQGRLLHVMPAKKKHTSDNFEVDQGLKTVKQRRED QKKEAEAGGDTRAWNSLFMRSDTVVENIARRHGVSKSEILDPSADDLAVRVALGETQVLAETKKALATAGVNVKSLEEIAAGNTDGLKRSKDVLLVKNLP YASSEAELAKMFGKFGTLDKIILPPTKTMGLVVFLQPSDARAAFRGLAYKRYKDAPLYLEWAPADILSPSPTSKGDYASITAVGQDDIKRVILEQTIEGT TEIDIDPDRTEITKHKKNEVYVSKGFGFLEFDSVETAANICRDLQGTILDGHALILQLCHAGKDEQQVKKKVGKDTSSTKLLVRNVAFEATEKDLRQLFS PFGQNLTRAKEGETLEELRERTTAQFADEENSTKSSKKRKNMAVLDEGTMKFQRFED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	0	1
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	2.0	0.9380
AT3G55160			unknown protein		Lus10007252 [exp]	4.7	0.9354
AT2G04235			unknown protein		Lus10025175 [exp]	5.5	0.9330
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	7.2	0.9270
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	7.7	0.9100
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	8.1	0.9080
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	9.4	0.9123
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	11.4	0.9248
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10042754 [exp]	11.5	0.8726
AT1G42440			unknown protein		Lus10030752 [exp]	12.2	0.9061

Compare expression of checked genes

Lus10040636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.