Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45190 546 / 0 Cyclin family protein (.1.2) AT4G19600 521 / 0 CYCT1;4 Cyclin family protein (.1) AT4G19560 318 / 7e-103 CYCT1;2 Cyclin family protein (.1) AT1G35440 254 / 4e-81 CYCT1;1 cyclin T1;1 (.1) AT1G27630 245 / 7e-77 CYCT1;3 cyclin T 1;3 (.1) AT2G26430 137 / 3e-35 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT5G48630 79 / 2e-16 Cyclin family protein (.1.2) AT5G48640 76 / 3e-15 Cyclin family protein (.1) AT5G27620 44 / 0.0002 CYCH;1 cyclin H;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036192 [exp] 530 / 0 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10038329 [exp] 518 / 0 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10018272 [exp] 424 / 5e-147 AT5G45190 116 / 3e-29 Cyclin family protein (.1.2) Lus10021927 [exp] 231 / 5e-70 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10041213 [exp] 163 / 4e-45 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10041418 [exp] 125 / 4e-30 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10036191 [exp] 108 / 1e-28 AT5G45190 109 / 1e-29 Cyclin family protein (.1.2) Lus10036509 [exp] 96 / 5e-21 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3) Lus10003151 [exp] 87 / 4e-19 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148800 [exp] 658 / 0 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 645 / 0 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 518 / 7e-179 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 515 / 1e-177 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 317 / 4e-103 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.008G150500 [exp] 221 / 9e-67 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.010G090400 [exp] 172 / 1e-48 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.008G043600 [exp] 147 / 7e-39 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.014G194900 [exp] 82 / 2e-17 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.002G246800 [exp] 82 / 2e-17 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040640 pacid=23157723 polypeptide=Lus10040640 locus=Lus10040640.g ID=Lus10040640.BGIv1.0 annot-version=v1.0 ATGACGCGGATATTGCCTGGTGAATCTTCAAGTCATGGTCCTTCAGAGAGTGGGACCTCCAAAAATTATCAGGACAAGCCCGAGGAAGGAGCTCGTTGGT ATTTTACAAGGAAAGAGGTAGAAGAAAATTCTCCATCAAGGCTAAATGGCATCGACTTGAAGAAAGAAACGTATTTACGCAAGTCATATTGCACATTCTT GCAAGACCTTGGCATCAAGCTTAAAGTACCCCAAATTACTATAGCCACGGCAATAGTGTTTTGTCATCGATTCTTCATTCGTCAGTCACATGCAAGGAAT GACAGGCGGACTGTAGCTACAGTGTGCATGTTTCTTGCTGGTAAGGTTGAGGAGACTCCTCGTGGTCTAAAGGATGTAATTATGGTCTCCTACGAGATAA TAAATAAAAAGGATCCTGCTGCTGCCCATAGGATCAAACAGAAGGAAGTATATGAGCAGCAAAAAGAGCTTTTTCTGCTCGCCGAGAAGGTTGTCCTCAG CACTTTGGGTTATGACTTTAATGTCTATCACCCGTACAAACCTCTGGTCGAGGCGATTAAGAAATTCCAAGTTGCAAAGAATGCACTTGCCCAAGTGGCG TGGAATTTTGTTAATGATGGACTGAGGACTTCGCTTTTCTTGCAATTTAAGCCGCGTCATATTGCAGCAGGTGCCATATTCCTTGCTGCCAAATTCCTAA AAGTGAAGCTCCCATCAGATGGTGAGAGAGTCTGGTGGCAGGAATTTGATGTCACCCCACGCCAATTAGAGGAGGTCAGTAATCAGATGCTTGAATTATA TGAGCAAAACAAAGTGGCGCAGTCTCAGGGAAGTCATGAAGTGCAAACTGGAGGTGGCCAAGCTCATTCAAGTCCGTGTAAAACACCTATTTCGAATGAA GAGCATGCACCAAAGCCAACATCATCTCGTTTGGGGACTGAGCACTCATATGGCAGTGCAGAGAGCGATAGTGTTATTACAGACCACAAGGTAGATTTAG AAAATGAGGATATTCAACGCCCAGATAACTTTTTCGTCAAGGAAAACCGGAGAGAAGCCTTGAACAAGTCTAGGTCTGCAGGAGAGCAGATGAATGGAGA CGAAACGACTGGTGAAAGGAGTGAAGGTGTGAACGCAGGAGAGGGGAAGCACGATATGTCACGCAAGCCTAGTGGTTTGGCGAGCCGGAACTTGGATTCA AGGGAAGCTGCAGTTGGTCACCAATCCCCTAAAGATGCTATAAAGATGATTGATAGAGACAAAGTAAAGGCAGCACTTGAAAAAAGAAAGAAAGCTCGCG GAGAAATGATGAGGGAAAAGGATGTAATGGATGAGGATGATCTTATCGAAAGAGAACTGGAGGATGGGATCGAGTTGGCTGCAGAGGATGAGAAAATCAA GCAGGAACAGAACTGGACGAAGATGGAAAGTGCAGAGGACGATGATGATGGTAACCATGAAGAAGGAAGGTTGGAGATGGACAATGCGGAGGAAGGGGCA ATGGTAGAGGATGACGCTTCAGTTTCCAACAGTCGGAAAAGAAAAGCTGGGAGCTCTTCTCTGAGGGACTCAGACGGGAAGAAGCGGCAAGGTTGCTTAT CCAACAGTTACGTCCATGATTCTCTTGAAGATGATCACGGCAGCACGGGCTGA
AA sequence Show only first row Show all	>Lus10040640 pacid=23157723 polypeptide=Lus10040640 locus=Lus10040640.g ID=Lus10040640.BGIv1.0 annot-version=v1.0 MTRILPGESSSHGPSESGTSKNYQDKPEEGARWYFTRKEVEENSPSRLNGIDLKKETYLRKSYCTFLQDLGIKLKVPQITIATAIVFCHRFFIRQSHARN DRRTVATVCMFLAGKVEETPRGLKDVIMVSYEIINKKDPAAAHRIKQKEVYEQQKELFLLAEKVVLSTLGYDFNVYHPYKPLVEAIKKFQVAKNALAQVA WNFVNDGLRTSLFLQFKPRHIAAGAIFLAAKFLKVKLPSDGERVWWQEFDVTPRQLEEVSNQMLELYEQNKVAQSQGSHEVQTGGGQAHSSPCKTPISNE EHAPKPTSSRLGTEHSYGSAESDSVITDHKVDLENEDIQRPDNFFVKENRREALNKSRSAGEQMNGDETTGERSEGVNAGEGKHDMSRKPSGLASRNLDS REAAVGHQSPKDAIKMIDRDKVKAALEKRKKARGEMMREKDVMDEDDLIERELEDGIELAAEDEKIKQEQNWTKMESAEDDDDGNHEEGRLEMDNAEEGA MVEDDASVSNSRKRKAGSSSLRDSDGKKRQGCLSNSYVHDSLEDDHGSTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	0	1
AT4G33740			unknown protein		Lus10012453 [exp]	2.6	0.8166
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10008862 [exp]	3.5	0.7567
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10014523 [exp]	4.7	0.7715
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	6.2	0.7689
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	7.9	0.7495
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	9.0	0.7426
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	16.1	0.7498
AT4G18905			Transducin/WD40 repeat-like su...		Lus10001126 [exp]	18.8	0.7187
AT3G17120			unknown protein		Lus10010906 [exp]	20.4	0.6951
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	21.5	0.7285

Compare expression of checked genes

Lus10040640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.