Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07200 45 / 2e-06 RING/U-box superfamily protein (.1.2) AT2G26350 42 / 4e-05 PEX10, ATPEX10 peroxin 10 (.1) AT1G18660 39 / 0.0005 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT5G48655 39 / 0.0006 RING/U-box superfamily protein (.1.2.3) AT1G74990 38 / 0.0007 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018271 [exp] 191 / 1e-63 AT3G07200 51 / 2e-08 RING/U-box superfamily protein (.1.2) Lus10022569 [exp] 48 / 3e-07 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10022774 [exp] 47 / 6e-07 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3) Lus10020007 [exp] 44 / 8e-06 AT2G26350 449 / 2e-158 peroxin 10 (.1) Lus10010791 [exp] 41 / 0.0001 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 41 / 0.0001 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10019075 [exp] 39 / 0.0006 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022492 [exp] 38 / 0.0009 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082200 [exp] 49 / 1e-07 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.003G148300 [exp] 47 / 4e-07 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.014G191400 [exp] 43 / 2e-05 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.006G222000 [exp] 42 / 3e-05 AT2G26350 519 / 0.0 peroxin 10 (.1) Potri.002G245500 [exp] 42 / 3e-05 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.014G040400 [exp] 40 / 0.0001 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 40 / 0.0002 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 39 / 0.0003 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 39 / 0.0005 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10040641 pacid=23157823 polypeptide=Lus10040641 locus=Lus10040641.g ID=Lus10040641.BGIv1.0 annot-version=v1.0 ATGAGTACTCCCCCACCGAGTCCAACCAATGCTCACAATTGCTCGCCTGAGCAGGAAACCCACAATGGTGGAGGTGGTGATGCTAGTACTGATCGTGTTA TTGGTGAAGCTGCAGAGATACTGCACAACTTTGGTACTGCAGCTGCTGGTGATCATCGTGGTGTAGCGCCTGTTGTTGCTGAACCAGATGATGATGTGGT GGAAGTGAATGCTGCTGATCATCAAGTGGGGGCTGGTGTACAGAGGTTAAGGTGTGCGATATGCAGGGGGGAGAGGGTGAGGGATCCGACGGCGACGATG TGCGGACATGTGTTCTGCAGGATCTGCATTCTGAATGCTCTCAACTGGAATAGGATGTACCCGACTTGCAGGGCACCTATCCGCCGCGGCGAACGTGCCC TTTTGAGGATCTACCTCTCCTAG
AA sequence Show only first row Show all	>Lus10040641 pacid=23157823 polypeptide=Lus10040641 locus=Lus10040641.g ID=Lus10040641.BGIv1.0 annot-version=v1.0 MSTPPPSPTNAHNCSPEQETHNGGGGDASTDRVIGEAAEILHNFGTAAAGDHRGVAPVVAEPDDDVVEVNAADHQVGAGVQRLRCAICRGERVRDPTATM CGHVFCRICILNALNWNRMYPTCRAPIRRGERALLRIYLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07200			RING/U-box superfamily protein...		Lus10040641 [exp]	0	1
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10003743 [exp]	4.0	0.8736
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	6.5	0.8109
					Lus10000528 [exp]	11.2	0.7808
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	22.5	0.7834
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10035443 [exp]	87.3	0.7126
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	94.5	0.7642
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10000993 [exp]	102.8	0.7805
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Lus10039962 [exp]	109.8	0.7431
AT2G32235			unknown protein		Lus10008093 [exp]	170.4	0.7198
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	228.9	0.7224

Compare expression of checked genes

Lus10040641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.