Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16510 90 / 2e-23 SAUR-like auxin-responsive protein family (.1) AT1G56150 85 / 8e-22 SAUR-like auxin-responsive protein family (.1) AT3G12830 84 / 2e-21 SAUR-like auxin-responsive protein family (.1) AT1G79130 82 / 1e-20 SAUR-like auxin-responsive protein family (.1) AT3G61900 61 / 1e-12 SAUR-like auxin-responsive protein family (.1) AT4G31320 61 / 9e-12 SAUR-like auxin-responsive protein family (.1) AT2G24400 57 / 1e-10 SAUR-like auxin-responsive protein family (.1) AT2G46690 55 / 2e-10 SAUR-like auxin-responsive protein family (.1) AT4G34760 55 / 2e-10 SAUR-like auxin-responsive protein family (.1) AT4G22620 55 / 4e-10 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018269 [exp] 258 / 5e-89 AT1G16510 92 / 4e-24 SAUR-like auxin-responsive protein family (.1) Lus10031754 [exp] 82 / 3e-20 AT3G12830 170 / 2e-55 SAUR-like auxin-responsive protein family (.1) Lus10031178 [exp] 74 / 4e-17 AT1G56150 128 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 61 / 7e-12 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 54 / 6e-10 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 54 / 2e-09 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10042374 [exp] 53 / 2e-09 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 53 / 4e-09 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10035716 [exp] 53 / 8e-09 AT2G24400 157 / 9e-49 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G096400 [exp] 83 / 5e-21 AT3G12830 164 / 2e-53 SAUR-like auxin-responsive protein family (.1) Potri.007G067800 [exp] 79 / 2e-19 AT3G12830 148 / 5e-47 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 68 / 1e-14 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.002G057500 [exp] 57 / 2e-11 AT3G12830 64 / 2e-14 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 54 / 6e-10 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.002G000600 [exp] 54 / 9e-10 AT1G43040 113 / 2e-33 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 55 / 1e-09 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 54 / 2e-09 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 51 / 5e-09 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 52 / 6e-09 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10040643 pacid=23157626 polypeptide=Lus10040643 locus=Lus10040643.g ID=Lus10040643.BGIv1.0 annot-version=v1.0 ATGAAGAAACTGTTCCGGACCCTCTCCGACAAGGTCCGTAAAATCAGCACCGGAAGAATGAGCTCCTCAGACCGGGTCGGCGGCTACTCCGTCCTTCGCC GTACCAGCTCTGATTCCGAGCTCCGGCGAAGGAGGATGAGGGGTAAGAACAAACTGGCCCAACTGCTGCAGATGAGGCTCGGCAAGAAGAGATCGGTGGT GACAGTCCCGGCGGGTCATTTCCCGGTTCAGGTAGGGACCGATGAGGAGGCGGCGGAGACGTTTATGGTCAGCGCGAAGCTGCTAAGGCACCCGGCGTTT GTGAACCTGCTGAAGATATCGGCGGCGGAGTTTGGGTATGGGCAGAGCGGCGTGCTGAGGATCCCGGTTCGGGTGATGGTTTTCCAGCGGGTTATGGAGC TGATTCGGGTGACCAAGGACCCAGCTGGAGTGGTTGATTGGGACGATGATTTCAACTCAATGATTAACTAG
AA sequence Show only first row Show all	>Lus10040643 pacid=23157626 polypeptide=Lus10040643 locus=Lus10040643.g ID=Lus10040643.BGIv1.0 annot-version=v1.0 MKKLFRTLSDKVRKISTGRMSSSDRVGGYSVLRRTSSDSELRRRRMRGKNKLAQLLQMRLGKKRSVVTVPAGHFPVQVGTDEEAAETFMVSAKLLRHPAF VNLLKISAAEFGYGQSGVLRIPVRVMVFQRVMELIRVTKDPAGVVDWDDDFNSMIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16510			SAUR-like auxin-responsive pro...		Lus10040643 [exp]	0	1
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	7.5	0.7729
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Lus10008353 [exp]	12.6	0.7672
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	15.2	0.7628
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	19.1	0.7631
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019871 [exp]	20.2	0.7636
AT3G59110			Protein kinase superfamily pro...		Lus10006544 [exp]	30.1	0.7481
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	32.3	0.7581
					Lus10041470 [exp]	37.2	0.6625
AT3G23255			unknown protein		Lus10011825 [exp]	38.6	0.7619
AT3G48210			unknown protein		Lus10042089 [exp]	49.9	0.7353

Compare expression of checked genes

Lus10040643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.