Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03420 126 / 3e-35 Protein of unknown function (DUF789) (.1) AT1G73210 124 / 1e-34 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G03610 122 / 9e-34 Protein of unknown function (DUF789) (.1) AT4G28150 118 / 3e-32 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 118 / 7e-32 Protein of unknown function (DUF789) (.1) AT4G16100 92 / 1e-21 Protein of unknown function (DUF789) (.1) AT5G49220 91 / 2e-21 Protein of unknown function (DUF789) (.1) AT2G01260 78 / 3e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G15030 77 / 2e-16 Protein of unknown function (DUF789) (.1) AT5G23380 71 / 1e-14 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018267 [exp] 236 / 4e-79 AT1G73210 127 / 3e-35 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10038327 [exp] 155 / 4e-46 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 151 / 5e-44 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10018572 [exp] 119 / 4e-32 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 117 / 1e-31 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 94 / 4e-23 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 92 / 1e-21 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 91 / 2e-21 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 87 / 2e-20 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152500 [exp] 139 / 7e-40 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 136 / 7e-39 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 126 / 3e-35 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.013G144000 [exp] 119 / 1e-32 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 94 / 1e-22 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 90 / 3e-21 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 86 / 1e-19 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 86 / 1e-19 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.004G068700 [exp] 52 / 7e-08 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 50 / 4e-07 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10040646 pacid=23157685 polypeptide=Lus10040646 locus=Lus10040646.g ID=Lus10040646.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCATCGTCGACCATCAGTGGCGCTGCTATGCCGGAGCCAACCAACCTCACGAGCTTCCTCCAAACCGTCACTCCCGCCCCTCCATTGAAGT TTGCCCCTACTCCTGCTCCTCCTCCTCAGAGCCGTGATCTCAACAGTCAGTTGCAGCTGCTTCAGATCAACAACGGGATTGAATACTTCACCTTAGCGGA TCTGTGGAAATGCTACGACGAGTTTAGTGCCTCCGGCGCTGAAACTGTGGTGTCGCTCGGCGGTAGTGACGTCACTTCTCAGTATTACGTCCCTTACCTC TCTGCTATCCAGCTCTATACCAACGAGCCCTTCTCTGCTTTCAGTAGCCCTAGGTCCAGCGGTGGCCATGACTGCAACTCGGTGGAAGTTGAGAAGGAGT CGACTGATGGAGACAATGTTCATGATGGATCCTCTCATAAGGAGGACAAGCTTGGTACTCGTTACTTACATTTCATTGAGTCGTGCTCTCCTTACCAAAG ACACCCACTGTCTGAGAAGGTGGCTCAGTTAGCAGTAAAGAATCCAGGGCTAATGACACTTAAGAGCGTGGATCTCTCACCGGCTAGCTGGATCTCCATT GCTTGGTAA
AA sequence Show only first row Show all	>Lus10040646 pacid=23157685 polypeptide=Lus10040646 locus=Lus10040646.g ID=Lus10040646.BGIv1.0 annot-version=v1.0 MSSSSSTISGAAMPEPTNLTSFLQTVTPAPPLKFAPTPAPPPQSRDLNSQLQLLQINNGIEYFTLADLWKCYDEFSASGAETVVSLGGSDVTSQYYVPYL SAIQLYTNEPFSAFSSPRSSGGHDCNSVEVEKESTDGDNVHDGSSHKEDKLGTRYLHFIESCSPYQRHPLSEKVAQLAVKNPGLMTLKSVDLSPASWISI AW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03610			Protein of unknown function (D...		Lus10040646 [exp]	0	1
AT3G19300			Protein kinase superfamily pro...		Lus10014071 [exp]	11.9	0.8672
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10013250 [exp]	20.9	0.7388
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	55.7	0.7847
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	65.0	0.7455
AT2G40630			Uncharacterised conserved prot...		Lus10030527 [exp]	66.9	0.7612
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	72.2	0.7770
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	87.4	0.7362
AT5G62960			unknown protein		Lus10042109 [exp]	116.6	0.7358
					Lus10010102 [exp]	139.4	0.7135
AT1G50660			unknown protein		Lus10032637 [exp]	169.2	0.7351

Compare expression of checked genes

Lus10040646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.