Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17820 623 / 0 Putative integral membrane protein conserved region (DUF2404) (.1) AT1G73200 599 / 0 Putative integral membrane protein conserved region (DUF2404) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018266 [exp] 1172 / 0 AT1G17820 696 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10036188 [exp] 895 / 0 AT1G17820 687 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10038326 [exp] 881 / 0 AT1G17820 705 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155000 [exp] 733 / 0 AT1G17820 692 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Potri.018G152400 [exp] 721 / 0 AT1G17820 686 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10296 [flax] [poplar] MMM1 Maintenance of mitochondrial morphology protein 1
Representative CDS sequence Show only first row Show all	>Lus10040647 pacid=23157607 polypeptide=Lus10040647 locus=Lus10040647.g ID=Lus10040647.BGIv1.0 annot-version=v1.0 ATGTGGCTGTCGCTCTTTTTCTTCCTTGGCTTCTTGCTTGGGGCGCTTGCTCTTGCTGCTTTCCAAGCTCTGGCCGCTTATGTCTTGCTGCTTCGACTCA AACATAAGGTTTCTCATCAGGCTGCCAAATTGAACGACTCTACGGATTCTCAGAGGGACCTTGATCCCCGCCAGTCGCTCAAATACGCTCATGACAAGAA GGGAGTGGTTTGGGTTCTTGAGCCGGATAAAGTTCCGAAAAATTGGTCGGGAGAAAAGGAGCAAAAGAAGAAGAAAGATATGTATGAGGTTCTCCCTGTT CGAAGATCAGCTAAAATCAGGGACCGTTTCCTTATTCTGGTTGATTCAGATGGTACGCATACAGCTGTTCCTTTGGTCGGTTGCATTGTAGACGCTATTT CTGCTACTAGTATGCCTTCAAGAAAATGGGCCAAAAGGTATCCTATTAAAGTTGAAAGCAAGAGTTCCTTGATCTACAAGGGAAGTAGAACAGTTTACAT TTATCTTGAAACATCATGGGAGAAGGAGTCATGGTGTAAAGCCCTCCGTCTTGCCGCATGTGACGACAAACAGAAACTTTCATGGTTTACCAAAGTGACT GAAGAGTTCCACTCTTATTTGATGTCCATGAATACAGGATATCCTGCGTTTATGAAACCCTCTACAGGGTGCAATGGAGAAATCATAGATAGGATTAATA AGTTGGATGGTTCAACATCCAAGGTTCGGTCATTTTGGAAAAAGCTTTCTAAAAAAGCTTCAAAGAATCATTCAGAGAATAAGACAAATCCTTCATCAAG CCGTGAAAGGTCTCGTCTGTGTCAAGATTCCTTACCGGTTGGTAGCATGCTAAAGGCTGCTCCATCAGGGAAAGTCCCTACCATCTCTGAAGAAGACAGT ACGGCCTCATCAGCAGTCTATTCTCGCTCCCAAAGCTATGCCTCTTCTGATGGAGAATATGATGACAGGTACAATGTAGATGATGGAACACTGTGCTGGA ATTTGCTTATTTCTCGCCTCTTCTTTGATGTCAAAGGAAATCCGGAGACAAAGAATTCAGTACAAGCACGGATTCAGAGAACATTGTCTAATATGAGAAT CCCAACTTACATCGGTGAAGTTATATGCACAAGCCTACACCTCGGGAACCTCCCTCCTTACATCCATGGAATTAGGGTTCATCCTGTGGACATGAGTGAT GTTTGGATGTGGGATGTTGATTTAGAATATTGTGGTGGAGTGGTACTGGATATCGAAACACGGCTGGAAGTTCGTGATCTAGATCTTCAAAAAGGTATTG GAGACACGAATGGAGAACCAAACTCAGGGGGAGATATCCCTTCAGACCTGCTGGAAGGTTTCCAAAATTATGGGAAGCAGTTCAATCTTCCTGAGGGTAA TGTTGACACCCAAGAGCATAAAGAGGAAGGGGATCCTAAAATCGATGCGTCGAAAAGCATTTCAAGCAGTCTGCCACCTTCTACAAACATGTCTAAGTGG AAGACCATTGTTAATTCAATTGCAAAACAGGTTTCACAGGTGCCACTTTCTCTGTCCATAAGGGTTTCTTCTCTCAGGGGAACATTGCGGTTCCACATAA AGCCACCTCCTTCTGATCAGCTGTGGTTTGGTTTCACATCCATGCCTGATATAGAGTTTGAACTGGAATCTTCTGTTGGAGAACACAAGATTACTAGTGG CCATATTGCTTTGTTCCTCATCAATCGGTTCAAGAATTCAATCAAAGAAACTTTGGTACTTCCAAACTGCGAGAGTATGTGCATTCCGTGTATGTTGGCA GAAAAGAACGATTGGGTTCCTCGAAAAGCTGCGCCTTTTATGTGGCTTAATCGAGAAGCACCCACTGACCATCCACCCACAGGCGAAGCTGTTAGTTCCC TTCCACCTAAACCAAAATCCAAGTCCGAAGAAAAAACGGGGGCCTCCAGCAACAATAATAGTCCACCAGACAGCAATCATGGAGCTACTAATAGGAATGG TGGCGAAAATCAACTGAAACCTGACTCTACAGATTCCTCGGCTAGCTCGGAGAAGTCACCAACAGAAACCAGTAAATTAGTGGAGGAGCTAAGAACTCCC TTGTTGGACCGCCGCGAATCACAAGACGACCACCACGAGCATAATGGGAACCATGTTTCTGAAAGCTCATCAACATCTAGGGCTCTAATAAATGTGGATA GGTCGATAGAAGCTGTTGACGATTCGAAGAAATCAGGACGTAGGGTGAGGATGCTTGATCTGGGGAAGAAAATGAGTGAGAAGCTTGAAGAGAAGAGGCG CCATCTTGAAGAAAGGAGTAGAAGCTTTGTGGAGAAGATGAGAGATAAAGCTGAACATAAATGA
AA sequence Show only first row Show all	>Lus10040647 pacid=23157607 polypeptide=Lus10040647 locus=Lus10040647.g ID=Lus10040647.BGIv1.0 annot-version=v1.0 MWLSLFFFLGFLLGALALAAFQALAAYVLLLRLKHKVSHQAAKLNDSTDSQRDLDPRQSLKYAHDKKGVVWVLEPDKVPKNWSGEKEQKKKKDMYEVLPV RRSAKIRDRFLILVDSDGTHTAVPLVGCIVDAISATSMPSRKWAKRYPIKVESKSSLIYKGSRTVYIYLETSWEKESWCKALRLAACDDKQKLSWFTKVT EEFHSYLMSMNTGYPAFMKPSTGCNGEIIDRINKLDGSTSKVRSFWKKLSKKASKNHSENKTNPSSSRERSRLCQDSLPVGSMLKAAPSGKVPTISEEDS TASSAVYSRSQSYASSDGEYDDRYNVDDGTLCWNLLISRLFFDVKGNPETKNSVQARIQRTLSNMRIPTYIGEVICTSLHLGNLPPYIHGIRVHPVDMSD VWMWDVDLEYCGGVVLDIETRLEVRDLDLQKGIGDTNGEPNSGGDIPSDLLEGFQNYGKQFNLPEGNVDTQEHKEEGDPKIDASKSISSSLPPSTNMSKW KTIVNSIAKQVSQVPLSLSIRVSSLRGTLRFHIKPPPSDQLWFGFTSMPDIEFELESSVGEHKITSGHIALFLINRFKNSIKETLVLPNCESMCIPCMLA EKNDWVPRKAAPFMWLNREAPTDHPPTGEAVSSLPPKPKSKSEEKTGASSNNNSPPDSNHGATNRNGGENQLKPDSTDSSASSEKSPTETSKLVEELRTP LLDRRESQDDHHEHNGNHVSESSSTSRALINVDRSIEAVDDSKKSGRRVRMLDLGKKMSEKLEEKRRHLEERSRSFVEKMRDKAEHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	0	1
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	1.7	0.9098
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	2.4	0.9080
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	2.8	0.9081
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	3.7	0.8948
					Lus10008674 [exp]	3.9	0.9012
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	4.0	0.9036
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	4.9	0.8990
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	5.7	0.8834
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	6.0	0.8824
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	6.6	0.8779

Compare expression of checked genes

Lus10040647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.