Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12770 334 / 1e-105 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 337 / 9e-105 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 327 / 5e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 327 / 7e-102 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 328 / 1e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 326 / 3e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 323 / 9e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19191 315 / 9e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16610 315 / 1e-98 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G15510 318 / 1e-97 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018264 [exp] 528 / 0 AT3G12770 179 / 8e-51 mitochondrial editing factor 22 (.1) Lus10018265 [exp] 365 / 2e-124 AT5G16860 192 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 347 / 7e-111 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 335 / 6e-105 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 331 / 5e-103 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 336 / 3e-101 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013176 [exp] 315 / 5e-99 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 314 / 8e-98 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 322 / 9e-98 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152300 [exp] 648 / 0 AT4G33990 489 / 1e-162 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 353 / 1e-111 AT3G22690 582 / 0.0 unknown protein Potri.013G152000 [exp] 338 / 1e-106 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.004G178200 [exp] 338 / 5e-106 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 330 / 3e-104 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 339 / 4e-104 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 332 / 9e-104 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 334 / 1e-103 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 330 / 2e-102 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 329 / 3e-102 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040648 pacid=23157913 polypeptide=Lus10040648 locus=Lus10040648.g ID=Lus10040648.BGIv1.0 annot-version=v1.0 ATGACTAACAAGTTGTCGTCTATACCATTATTCAACTCCAGAAAGCCATCACTGTATCTCTGGAATTTGAAAATACGAGACGCTGCAAATCGCTGCCTCT TCAACCAAACTTTTCACCTCTACCGTTCCCTGTTGAGCTCCGGCATCCGTGGCGGCAGTAGCTTCACTTACCCATTACTCCTCAAATCCGCCGCCTCCTG CTCCATCCCCGACGCATTCCATCTCGGTAAAACGATCCATTCCCACGTTCTGCATCTAGGTTTCCAGTCGGATGTGTACGTGCAGACATCACTCCTTGAC ATGTACTCGAAATGTCGTGACTTGGTTTCATCCCGCCAAGTGTTCGACGAAATGTCTGAAAGGAATGTTGTGTCTTGGAACTCCATGATCTCTGCTTATT GTAGTTGCTCTCTGTTTGACCAAGCCGTTTCTTTCCTTAACGAAATGAGGGGTCTTGGTCTGGGACCAAATTGGACAACTTTCGTTGTGCTGCTTTCTGC TTGTGGCGGCTCTGGTTCACTTCTTCAGGGCCTTTCAGCTCAGTGCTGCGTCTTCAAGATGGGGCTTCTGGATTTAGACAATGTGCCGTTAACTAACGCT GTGATGGGAATGCTCGTTAATCACGGACAGACTCGTGAAGCTCGTGCCATTCTTGACAAGATGCACGAGCCTTCGCTCATCTCTTGGACAACGGTACTTA ACGGTTATGTAGAGTCTAACAACACGGCCGAAGCTTTCTCTGTATTCAATCAGATGAGAAGAAGAGAAATCGTCAGCCAGCTGGATTTCGTAGCTTTCCT TGCCATGATCGCTTGTTGTGGACAACATGGTGACCTGGCAATAGCTTCGTCACTCCATTCGCTGATAATCAAAACCGGATGTGATGTCGAGAATGCCATT GCCATTCTGCTAGTGAGCATGTACACAAAATGTGGCGATCTTAGCTCAGCTAGACTTGTATTTGATTTCACAGGAGAGAAGACTATCTCGGTTTGGACAT CGATAATGGCTGCATATAATCACTCTAGTCATCCATCTGAAGCTCTGATTCTTTTCAAGAAGCTGCTGAGAACGAATGTTAAACCAGACGCAGCAGCTCT TGCAACAGTTCTTTCCGCTTGTGCCAATACGGGTTCTTTGAGTGTCGGTGAAGAAATCAAAGAGTACGTCACAAGAAATGGATTGAAATCCGATCAGCAG GTCCAGACATCTTTAATACACATGTTCTCCAAATGCGGAAGCGTAGAAAAGGCAAGAATAGTGTTCGATAAGATGTCAGTTAAGGACTTGACAGCGTGGA GCTCCATGATTAACGGATACGCGATTCACGGGATGGGAAACGAAGCTCTCGTTTTATTCCATAAGATGCGAGAATCGGAAGGAATAGTGCCGGATAGCGT TACTTACACGAGCGTGTTACTAGCGTGCAGTCATTTGGGACTCGTTGAGGATGGACTGAATTATTTTCGGAGCATGCAGAAGGATTTCGGAATTGAACCG GGGATAGAACATTATACCTGCTTGGTGGATCTTCTTGGGAGAGCTGGTCGGCTCGACTTGGCGATGGAAACGACATTAGAAATTCCTGGAGAGATTCAGG CGCACATGTGGCCTTCGTTTCTGAGTTCGTGCAGGAAATATGGAAATGTTGAACTGGGCGAATATGCTGCTAAGAAGCTGTTAGAACTGAGTCCTGATCG GACTGGGAATTATGTTCTGATGGCTAATCTGTACACGTCAGAAGGCAAGTGGAAGGAGGCTGCCGAGATGAGAAGCTCGATGGATGGTCGAGGATTAGTA AAGAAACCTGCTTGGAGCCAGGTCGAGATTAATGGTTCGGTGAATGATTCCATTGCCGGAGATCGATGA
AA sequence Show only first row Show all	>Lus10040648 pacid=23157913 polypeptide=Lus10040648 locus=Lus10040648.g ID=Lus10040648.BGIv1.0 annot-version=v1.0 MTNKLSSIPLFNSRKPSLYLWNLKIRDAANRCLFNQTFHLYRSLLSSGIRGGSSFTYPLLLKSAASCSIPDAFHLGKTIHSHVLHLGFQSDVYVQTSLLD MYSKCRDLVSSRQVFDEMSERNVVSWNSMISAYCSCSLFDQAVSFLNEMRGLGLGPNWTTFVVLLSACGGSGSLLQGLSAQCCVFKMGLLDLDNVPLTNA VMGMLVNHGQTREARAILDKMHEPSLISWTTVLNGYVESNNTAEAFSVFNQMRRREIVSQLDFVAFLAMIACCGQHGDLAIASSLHSLIIKTGCDVENAI AILLVSMYTKCGDLSSARLVFDFTGEKTISVWTSIMAAYNHSSHPSEALILFKKLLRTNVKPDAAALATVLSACANTGSLSVGEEIKEYVTRNGLKSDQQ VQTSLIHMFSKCGSVEKARIVFDKMSVKDLTAWSSMINGYAIHGMGNEALVLFHKMRESEGIVPDSVTYTSVLLACSHLGLVEDGLNYFRSMQKDFGIEP GIEHYTCLVDLLGRAGRLDLAMETTLEIPGEIQAHMWPSFLSSCRKYGNVELGEYAAKKLLELSPDRTGNYVLMANLYTSEGKWKEAAEMRSSMDGRGLV KKPAWSQVEINGSVNDSIAGDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10040648 [exp]	0	1
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	2.4	0.8385
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10018492 [exp]	3.2	0.8121
AT5G25530			DNAJ heat shock family protein...		Lus10008109 [exp]	4.2	0.7781
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	10.7	0.7861
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	11.6	0.7910
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	12.3	0.7847
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	13.0	0.7981
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	14.6	0.7961
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	15.6	0.7765
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	21.7	0.7850

Compare expression of checked genes

Lus10040648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.