Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 286 / 3e-96 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 247 / 2e-80 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 223 / 1e-70 Melibiase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018258 [exp] 320 / 2e-109 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 310 / 9e-105 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10024401 [exp] 271 / 1e-89 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 253 / 1e-82 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 234 / 5e-75 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10036176 [exp] 232 / 1e-74 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 229 / 3e-73 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10034218 [exp] 226 / 2e-71 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10029046 [exp] 222 / 3e-70 AT3G56310 650 / 0.0 Melibiase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152200 [exp] 315 / 1e-106 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 267 / 8e-88 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 263 / 2e-86 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 256 / 4e-84 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 222 / 3e-70 AT3G56310 681 / 0.0 Melibiase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10040650 pacid=23157906 polypeptide=Lus10040650 locus=Lus10040650.g ID=Lus10040650.BGIv1.0 annot-version=v1.0 ATGGTTTCATCCGGACTTGCGGAGCTAGGCTATCACTACATAAACTTGGGGAATATGGTTCCTAAAGCTTCAACGTTTCCCTCTGGAATCAAGGGTTTGG CAGACTATGTTCACTCCAAAGGCCTCAAGCTTGGGATTTACTCTGATGCAGGGAACCAGACATGCAGCAAGAAAATGCCAGGATTATTAGGCCACGAAGA ACAAGATGCCAAAACCATTGCTTCCTGGGAAATCGACTACTTGAAATATGACAATTGTAATGATGATGGTACAAGCCCAACAGTCAGGTATCCAGTAATG AGCAAAGCACTGATAAACACAGGAAGACCAATCTTCTCCTCTATGTGCGAATGGGGTGTCGAAGACCCTGCAACCTGGGCCAGCACCATAGGAAATAGTT GGAGGACAACTGGGGACATCAGTGATACCTGGGAAAAAATGCTGAAACGGGCCGATAAGAACGATCAATGGGCATCTTATGCCGGACCGGTAATGCAAAG TTTAAGGATCTTAATCATCTTACATAATATTCAGGTGTGGGCTGGTCCACTGAGCAATAATAAGGTGGCAGTTGTGCTTTGGAACAGAAGTCCAGTGCAG GCAAATGTTACTGCAGAGTGGTCCGATATCGGTCTCCATTCGTCTGATGTTGTGGATGGCAGAGATTTATGGACGAAATGGACTCTGCAATCTGTGAGTG GAGGAATCTCAGCAGAGTTGGAGTCTCATGCATGTAAAATGTATGTTCTTACTCCCAAGTCATGA
AA sequence Show only first row Show all	>Lus10040650 pacid=23157906 polypeptide=Lus10040650 locus=Lus10040650.g ID=Lus10040650.BGIv1.0 annot-version=v1.0 MVSSGLAELGYHYINLGNMVPKASTFPSGIKGLADYVHSKGLKLGIYSDAGNQTCSKKMPGLLGHEEQDAKTIASWEIDYLKYDNCNDDGTSPTVRYPVM SKALINTGRPIFSSMCEWGVEDPATWASTIGNSWRTTGDISDTWEKMLKRADKNDQWASYAGPVMQSLRILIILHNIQVWAGPLSNNKVAVVLWNRSPVQ ANVTAEWSDIGLHSSDVVDGRDLWTKWTLQSVSGGISAELESHACKMYVLTPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10040650 [exp]	0	1

Compare expression of checked genes

Lus10040650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.