Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018257 [exp] 377 / 5e-131 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154900 [exp] 490 / 5e-174 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10040651 pacid=23157844 polypeptide=Lus10040651 locus=Lus10040651.g ID=Lus10040651.BGIv1.0 annot-version=v1.0 ATGGTGGTTCGAGCTTTCCCTTACTGTCGAGGGGCACCTCAGCGACCTAGCAATCCTCACCTTCTCCAAGGGCACACACAAATTCAGACGAGAGCAAGAA ACTGGAGAAGATTGTGTACCACAAGGCCCGAGGTGCGTTCAATTGCTTCTTTGGATGACTCGGATTTCGGGGTGTTCGTGGTCTCCGATTTGCACACGGA TTACAATGAGAATATGACATGGGTCAAGTGCTTGCCGACCAAAAAGCATCGGAGAGACGTTCTTATCGTGGCCGGCGATGTAGCCGAGACTTACAAGAAC TTCTATTTAACCATGGCGCTTTTGAAGGAGAAATTCGAGCATGTTTTCTTTGTCCCTGGGAATCATGATCTCTGGTGTCGCAAAGAAGAAGAGGATTCTC TTGATTCTCTCGAAAAGCTGAATAAGTTGCTTGGTGCTTGTAGAGGGCTTGGAGTGGAGACACACCCTTTGGTGATTAATGGCCTTGGGATCATTCCTTT GTTCTCCTGGTATCATGAGAGTTTTGACAGAGAGACTGACATCACTGGCTTCAGAATTCCGCCCTTGGAGATGGCGTGCAAGGACTTCCATGCTTGCAAA TGGCCAGAGGAACTCTCGATCAGAGACGACTCTCTGGCTCTACATTTTGATGCAATGAACAAAGGAAATGAGGAGAAAATCAAGCTGCTCCAGAGCACTT GTAGCCAGATCATTACATTCTCTCACTTCCTCCCCAGGCAAGAGCTATGTCCAGAGAAGAGAATGCTGTTCTATCCAAATCTTCCCAAAGTAATTGGCTC GGATAGTCTGGAAGAACGCATCAGATCAATCCATGGAACTGAAGACAGTGAATGCGCCTGCCATGTGTTTGGCCATACGCATTTTTGTTGGGATGCCATG ATTGACGGCATCAGGTACGTTCAGGCGCCATTGGCTTACCCAAGAGAAAGAGAAAGGAGGATGAATGGAGGCGACAACTGGCTGCCGTTTTGCGTTTATT CCGACGGAGAATTTTCCGACAAGATGTCACCTTGTTTTTGGTCGGATTATTACGCTGCCAACCCAAGAACACCTCATAACACCCAACTTGCCCCTTGGGT TGCCAGGTTCTATAAACAAAGCATTAGATAG
AA sequence Show only first row Show all	>Lus10040651 pacid=23157844 polypeptide=Lus10040651 locus=Lus10040651.g ID=Lus10040651.BGIv1.0 annot-version=v1.0 MVVRAFPYCRGAPQRPSNPHLLQGHTQIQTRARNWRRLCTTRPEVRSIASLDDSDFGVFVVSDLHTDYNENMTWVKCLPTKKHRRDVLIVAGDVAETYKN FYLTMALLKEKFEHVFFVPGNHDLWCRKEEEDSLDSLEKLNKLLGACRGLGVETHPLVINGLGIIPLFSWYHESFDRETDITGFRIPPLEMACKDFHACK WPEELSIRDDSLALHFDAMNKGNEEKIKLLQSTCSQIITFSHFLPRQELCPEKRMLFYPNLPKVIGSDSLEERIRSIHGTEDSECACHVFGHTHFCWDAM IDGIRYVQAPLAYPRERERRMNGGDNWLPFCVYSDGEFSDKMSPCFWSDYYAANPRTPHNTQLAPWVARFYKQSIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040651 [exp]	0	1
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	1.7	0.7744
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	2.4	0.7183
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	9.4	0.6932
					Lus10000810 [exp]	11.0	0.6442
AT3G61960			Protein kinase superfamily pro...		Lus10030182 [exp]	14.4	0.6772
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	17.0	0.7148
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	18.0	0.7334
AT4G31390			Protein kinase superfamily pro...		Lus10026952 [exp]	21.0	0.7022
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	21.5	0.6746
AT3G62010			unknown protein		Lus10038011 [exp]	25.0	0.6553

Compare expression of checked genes

Lus10040651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.