Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17810 365 / 1e-128 BETA-TIP beta-tonoplast intrinsic protein (.1) AT1G73190 359 / 3e-126 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT4G01470 266 / 8e-90 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT2G36830 263 / 2e-88 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT3G26520 256 / 1e-85 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT3G16240 231 / 2e-76 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT5G47450 213 / 4e-69 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT2G25810 210 / 8e-68 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT4G17340 204 / 2e-65 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT3G47440 162 / 7e-49 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018256 [exp] 468 / 1e-169 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10036187 [exp] 432 / 5e-155 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10038324 [exp] 430 / 2e-154 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10021510 [exp] 268 / 9e-91 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10022611 [exp] 267 / 3e-90 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10005885 [exp] 265 / 2e-89 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10023913 [exp] 265 / 3e-89 AT2G36830 391 / 3e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10014411 [exp] 263 / 1e-88 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10040863 [exp] 260 / 1e-87 AT4G01470 394 / 2e-140 tonoplast intrinsic protein 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154800 [exp] 404 / 4e-144 AT1G17810 372 / 1e-131 beta-tonoplast intrinsic protein (.1) Potri.018G152100 [exp] 396 / 4e-141 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1) Potri.010G209900 [exp] 276 / 9e-94 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.008G050700 [exp] 268 / 1e-90 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.006G121700 [exp] 262 / 4e-88 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.016G098200 [exp] 259 / 5e-87 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.004G216500 [exp] 254 / 5e-85 AT4G01470 331 / 2e-115 tonoplast intrinsic protein 1;3 (.1) Potri.009G005400 [exp] 253 / 7e-85 AT2G36830 355 / 7e-125 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.009G027200 [exp] 249 / 2e-83 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.001G235300 [exp] 246 / 4e-82 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10040652 pacid=23157821 polypeptide=Lus10040652 locus=Lus10040652.g ID=Lus10040652.BGIv1.0 annot-version=v1.0 ATGCCTAGAAGATACGGATTTGGGAGAGCGGAAGAGGCCACCCACCCTGATTCCTTCAGAGCTACTCTAGCTGAACTCGTTTCTACTTTCATCTTTGTCT TTGCTGGGGAAGGCTCCGGTCTTGCTCTTGACAAGCTGTACCAGGAAACAGGCCCCCCTGCTTCTGGACTGGTGATGATTGCACTTGCGCATGCACTAGC ACTCTTCGCCGCAGTAGCATCCAGCATCAACGTCTCCGGTGGACATGTCAATCCAGCTATCACCTTTGCTGCTCTTCTTGGAGGAAGGATTTCGGTCGTC CGAGCCATATATTACTGGATTGCTCAGCTTCTCGGCTCCATCGTCGCCTCCCTCTTGCTCCGCCTTGTCACCAACGGGATGAGGCCGGTCGGGTTCTACG TGCACTCCGAAGTGAGCGAGGTGGAAGGATTGATACTCGAAATCGCGCTGACGTTCGGGCTAGTTTACACGGTTTACGCGACTGCAATCGATCCCAAGAG AGGGAGCATCGGGATCATGGCGCCCCTGGCGATCGGGTTGATCGTCGGGGCAAACATCTTGGTCGGAGGGCCGTTCGATGGTGCAGCAATGAATCCAGCC AGAGCATTCGGGCCAACATTGGTCGGGTGGAGATGGAAGAACCACTGGATCTACTGGTTGGGTCCTTTCCTTGGTGCGGGTTTGGCAGCGATTGTTTACG AGTTCTTGGTTATCCCCACTGAGCCAACAATTCATACCCATCATCAGCCTTTGGCTCCTGAAGACTACTAA
AA sequence Show only first row Show all	>Lus10040652 pacid=23157821 polypeptide=Lus10040652 locus=Lus10040652.g ID=Lus10040652.BGIv1.0 annot-version=v1.0 MPRRYGFGRAEEATHPDSFRATLAELVSTFIFVFAGEGSGLALDKLYQETGPPASGLVMIALAHALALFAAVASSINVSGGHVNPAITFAALLGGRISVV RAIYYWIAQLLGSIVASLLLRLVTNGMRPVGFYVHSEVSEVEGLILEIALTFGLVYTVYATAIDPKRGSIGIMAPLAIGLIVGANILVGGPFDGAAMNPA RAFGPTLVGWRWKNHWIYWLGPFLGAGLAAIVYEFLVIPTEPTIHTHHQPLAPEDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	0	1
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	3.5	0.8983
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	6.4	0.8699
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	6.4	0.9165
AT3G45280		ATSYP72, SYP72	syntaxin of plants 72 (.1)		Lus10036118 [exp]	7.4	0.8365
					Lus10020135 [exp]	8.9	0.7481
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	9.5	0.9023
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	10.0	0.8489
AT3G07200			RING/U-box superfamily protein...		Lus10018271 [exp]	13.3	0.7048
					Lus10039965 [exp]	15.0	0.8939
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	15.2	0.7547

Compare expression of checked genes

Lus10040652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.