Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 259 / 9e-78 Leucine-rich repeat protein kinase family protein (.1.2) AT3G17840 244 / 3e-72 RLK902 receptor-like kinase 902 (.1) AT3G08680 236 / 4e-69 Leucine-rich repeat protein kinase family protein (.1.2) AT1G50610 232 / 1e-67 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 231 / 5e-67 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 221 / 9e-64 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 213 / 8e-61 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 213 / 9e-61 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 212 / 3e-60 RKL1 receptor-like kinase 1 (.1) AT1G64210 207 / 5e-59 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018255 [exp] 592 / 0 AT2G36570 271 / 4e-85 Leucine-rich repeat protein kinase family protein (.1) Lus10018254 [exp] 333 / 2e-111 AT5G67200 110 / 2e-27 Leucine-rich repeat protein kinase family protein (.1) Lus10031350 [exp] 275 / 3e-84 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10019113 [exp] 252 / 3e-75 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 226 / 1e-65 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 217 / 1e-65 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10017996 [exp] 219 / 1e-62 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10021673 [exp] 218 / 2e-62 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10004040 [exp] 217 / 3e-62 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154700 [exp] 587 / 0 AT1G48480 309 / 2e-96 receptor-like kinase 1 (.1) Potri.004G066300 [exp] 563 / 0 AT3G02880 301 / 4e-94 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 280 / 7e-86 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G117200 [exp] 229 / 2e-66 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 224 / 1e-64 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 221 / 9e-64 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 219 / 3e-63 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G121700 [exp] 217 / 6e-62 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.012G044600 [exp] 215 / 1e-61 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.015G035500 [exp] 215 / 2e-61 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10040653 pacid=23157813 polypeptide=Lus10040653 locus=Lus10040653.g ID=Lus10040653.BGIv1.0 annot-version=v1.0 ATGAATTTACCTCCCAACACAGTCTCTGCGGCGGCGGCTGTGGTGGCTCTGGCTCTGCTAATTCTCTGCTCTTTCTCAGTCGTTGACTCCGACAATGGCT TCTACCCTGACGAAAGAAACGCCCTGCTCCAGATCAGAGATTCCGTCCCTTCCACGGCGAATCTCCACGCGCTCTGGACGGGTCCCCCTTGCCGTGGGAA TTCGAGCAGGTGGGCAGGGATCGCCTGCAGGAACGGCCACGTGGTTCATTTGGTTCTCCAGGGGATCAACCTGACGGGGAATCTCCCCACAGGTTTTCTC CGGAACATAACATTTCTGACCAAGCTCAGCTTGGTCAACAACTCTATCTCCGGTTCTCTCCCGAACCTGACCGGTCTGGTCCGGATGGAGCAGGTGATCC TCTCTTCCAACAGCTTCACCGGTTCGATCCCTCCGGACTATACTTCCTTACCGAATTTAGAGTTCCTGGAGCTGGAACTTAACTCTCTAGAGGGACCGAT TCCAAGTTTTAACCAGTCCGGGTTGACCCGGTTCAACGTGTCGTACAACCGGCTCGGTGGGCCGATTCCTCAGACCGAAACTTTGGGGAGGTTTCCGAAA AGCTCCTTTGATCATAACTCAGATGGTCTATGTGGGCCGCCGTTGGCGGCTTGTCCTGTTTTCCCTCCGCCCCCGCAGCCGCCGAAACCGAGTCCGCCAG CGCAGCCGCCGAAACCAAGTCCGCCGGTGGGGGGAAGGAAGAGGAGGTTTAATCTGTGGTTGATTGTGGTGATCGCACTGGGAGCCGCCATTTTAGCATT CTTGATCGTCATGCTTTGCTTGATCCGTTTCAGGAAGCAGGGGAAATTAGGGAAACAAACACCGGAAGGTGTGAGCTACATAGAGTGGTCGGAAGGAAGG AAAATATATTCAGGAAGCGGAACAGACCCAGAAAAAACAGTAGAGTTAGACTTCTTTGTGAAAGAAATTCCAATTTTCGACCTTGAAGACTTGCTTAGAG CTTCTGCGGAAGTCCTTGGGAAAGGAAAAAACGGAAGCACTTACAAGACAACTCTGGAATCAGGCTCCGTCGTTGCTGTCAAACGCCTTAGAAAAGTCAA CGTCCTGCCACATAAAGAATTCGTCCAGCAAATGCAACTCCTCGGAAATCTCAAGCACCACAACCTTGCACCTGTCATCTCATTTTACTACTCTCCCGAT CAGAAGCTCATCATCTACGAATTCATCCCCGGCGGCAACCTTCATGAATTGCTACACGAGAACAGAGGAATGGGAAGAATGCCGCTAGATTGGACGGCGA GGCTATCAATAATCAAAGACATAGCCAAAGGACTAGCATATCTCCACAATTCACTCCCCTCCCACAGAGCTCCTCACGGCAACCTCAAATCCTCCAACGT CCTCGTCCAAAGGGAAGGACTAAACTACTACTGCAAGCTCACCGACTACGGCCTCCTCCCGCTCCTCCAATCCCAAAAGGTCTCCGAGAGGCTCGCCGTC GGTAGGTCGCCGGAGTACGGCCTGGGGAAGCGGCTGACCCACAAGGCCGACGTCTACTGCTTCGGAGTGGGGGGTCTGTCCGGGTGGGTCGGGTCGGCGG TGAACAGTGACTGGTCGACTGATATATTGGATTTGGAGATAATGCAGTCGAGGGAAGGGCACGGGGAGATGTTTCAGTTGACCGATTTGGCGTTGGAGTG TACCTGTGTGTTGCCGGAGAAACGGCCGAAGATGGCGGAGGTTGTGAGGAGGATTGAGGAGATTGAGCAGAGAAGGAAATGA
AA sequence Show only first row Show all	>Lus10040653 pacid=23157813 polypeptide=Lus10040653 locus=Lus10040653.g ID=Lus10040653.BGIv1.0 annot-version=v1.0 MNLPPNTVSAAAAVVALALLILCSFSVVDSDNGFYPDERNALLQIRDSVPSTANLHALWTGPPCRGNSSRWAGIACRNGHVVHLVLQGINLTGNLPTGFL RNITFLTKLSLVNNSISGSLPNLTGLVRMEQVILSSNSFTGSIPPDYTSLPNLEFLELELNSLEGPIPSFNQSGLTRFNVSYNRLGGPIPQTETLGRFPK SSFDHNSDGLCGPPLAACPVFPPPPQPPKPSPPAQPPKPSPPVGGRKRRFNLWLIVVIALGAAILAFLIVMLCLIRFRKQGKLGKQTPEGVSYIEWSEGR KIYSGSGTDPEKTVELDFFVKEIPIFDLEDLLRASAEVLGKGKNGSTYKTTLESGSVVAVKRLRKVNVLPHKEFVQQMQLLGNLKHHNLAPVISFYYSPD QKLIIYEFIPGGNLHELLHENRGMGRMPLDWTARLSIIKDIAKGLAYLHNSLPSHRAPHGNLKSSNVLVQREGLNYYCKLTDYGLLPLLQSQKVSERLAV GRSPEYGLGKRLTHKADVYCFGVGGLSGWVGSAVNSDWSTDILDLEIMQSREGHGEMFQLTDLALECTCVLPEKRPKMAEVVRRIEEIEQRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	0	1
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	1.7	0.9418
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	3.5	0.9385
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	3.7	0.9273
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10009969 [exp]	4.0	0.9137
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	6.2	0.9179
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	6.5	0.9389
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	6.9	0.9239
AT1G74790			catalytics (.1)		Lus10033116 [exp]	7.7	0.9322
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	8.1	0.9310
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	10.1	0.8956

Compare expression of checked genes

Lus10040653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.