Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07175 42 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018252 [exp] 92 / 5e-26 AT1G07175 53 / 8e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072201 [exp] 44 / 3e-07 AT1G07175 71 / 4e-18 unknown protein Potri.001G277600 [exp] 43 / 5e-07 AT1G07175 69 / 3e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040655 pacid=23157880 polypeptide=Lus10040655 locus=Lus10040655.g ID=Lus10040655.BGIv1.0 annot-version=v1.0 ATGGCGTCGTTGATTCGGATTTCGGCATTCGTTTGCATATTGCTGCTTGCTCTGGCTCTCCTCTCTTCAGCTCGCTACACTTCTGTTTCCTTCTCAGGGG CAGAGGAGGAGATGTTGTCGGAGGAAGGGAGGTCGTTGAAGGTGTCGCTTGCAGACTATGGAGAAACTTCGGCCAACACTGGCCACGATCCTTCTCCGAG CAGAGTTCGTAGCCGTCATGGCCATCGTCATCGTCATAGTCAGCGGAGAGGCTAG
AA sequence Show only first row Show all	>Lus10040655 pacid=23157880 polypeptide=Lus10040655 locus=Lus10040655.g ID=Lus10040655.BGIv1.0 annot-version=v1.0 MASLIRISAFVCILLLALALLSSARYTSVSFSGAEEEMLSEEGRSLKVSLADYGETSANTGHDPSPSRVRSRHGHRHRHSQRRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07175			unknown protein		Lus10040655 [exp]	0	1
					Lus10039990 [exp]	5.5	0.9035
					Lus10033534 [exp]	7.7	0.9035
AT2G14378			Protein of unknown function (D...		Lus10034455 [exp]	9.5	0.9035
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	11.0	0.9035
					Lus10022805 [exp]	12.2	0.9035
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	13.4	0.9035
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	14.5	0.9035
					Lus10011962 [exp]	15.5	0.9035
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	16.4	0.9035
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	17.3	0.9035

Compare expression of checked genes

Lus10040655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.