Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53400 195 / 5e-62 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones superfamily protein (.1) AT4G27890 193 / 2e-61 HSP20-like chaperones superfamily protein (.1) AT5G58740 45 / 3e-06 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018250 [exp] 306 / 4e-107 AT5G53400 213 / 4e-69 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10019028 [exp] 195 / 5e-62 AT5G53400 324 / 3e-111 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10005009 [exp] 195 / 1e-61 AT5G53400 306 / 2e-103 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10027048 [exp] 84 / 3e-21 AT4G27890 68 / 3e-15 HSP20-like chaperones superfamily protein (.1) Lus10040670 [exp] 54 / 3e-09 AT5G58740 216 / 2e-73 HSP20-like chaperones superfamily protein (.1) Lus10018234 [exp] 54 / 5e-09 AT5G58740 266 / 8e-93 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G132500 [exp] 202 / 3e-66 AT5G53400 225 / 1e-73 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.003G100900 [exp] 199 / 6e-64 AT5G53400 232 / 2e-75 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.015G013900 [exp] 197 / 4e-63 AT5G53400 283 / 8e-95 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.012G014100 [exp] 196 / 9e-63 AT5G53400 277 / 4e-93 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G251204 [exp] 52 / 2e-08 AT5G58740 298 / 1e-105 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10040656 pacid=23157890 polypeptide=Lus10040656 locus=Lus10040656.g ID=Lus10040656.BGIv1.0 annot-version=v1.0 ATGGCGATCCTCTCCGAAATCGTCGAAGAAACCCAACCACAACACCAACAACCGATCGAATCAAAGAAGGAGAAAAAAGCCTCATCGTCTCCGGTTCCCA ACGCCGGAAACGGCCTCGATTTGGGGAACTACTCATGGGGGCAGACCCTCCAGGAGGTGACGATCACAATCCCGGTACCTCAAGGGACAAGATCGAAGCA GATCACCTGCGAGATCAAGAAGAAATCCCTGAAGCTCGAAATCAAGGGATCGCCGACGATCATCGAAGGGGAGCTGTACGGGTCGGTGAAAGTCGGGGAG TCGTTCTGGAACTTGGAGGACCAGAGGATTGTCTCGATTCTGCTGACGAAATTGGACGACAAGACGAATTGGTGGAAGTCGCTGATGAAAGGAGGGCCGG AGATAGACGTGCAGAAGGTAGAGCCGGAGCCTAGCAAGATGAGCGATTTGGATTCGGAGACGAGGTCGGCGGTGGAGAAGATGATGTTCGACCAGAGGCA GAAACAGAGAGGGTTGCCTACCAGTGCGGAGATTGAGCAGCAGGAGATTCTGAAGAAATTTGATATGTCCAAGATGAAGTTTGTCGACAAGTTTAGCAAT ATGCCATAG
AA sequence Show only first row Show all	>Lus10040656 pacid=23157890 polypeptide=Lus10040656 locus=Lus10040656.g ID=Lus10040656.BGIv1.0 annot-version=v1.0 MAILSEIVEETQPQHQQPIESKKEKKASSSPVPNAGNGLDLGNYSWGQTLQEVTITIPVPQGTRSKQITCEIKKKSLKLEIKGSPTIIEGELYGSVKVGE SFWNLEDQRIVSILLTKLDDKTNWWKSLMKGGPEIDVQKVEPEPSKMSDLDSETRSAVEKMMFDQRQKQRGLPTSAEIEQQEILKKFDMSKMKFVDKFSN MP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	1.0	0.8110
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	5.7	0.8098
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	6.7	0.8023
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10024492 [exp]	9.2	0.6997
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	10.1	0.7607
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	15.7	0.7803
AT3G43660			Vacuolar iron transporter (VIT...		Lus10042804 [exp]	16.2	0.6445
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	18.6	0.7704
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10028118 [exp]	18.7	0.6643
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	18.7	0.7452

Compare expression of checked genes

Lus10040656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.