Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07180 742 / 0 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 724 / 0 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT4G28220 231 / 6e-69 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G21490 213 / 3e-62 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 204 / 7e-59 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT2G20800 198 / 9e-57 NDB4 NAD(P)H dehydrogenase B4 (.1) AT5G08740 108 / 4e-25 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G24170 45 / 0.0001 ATGR1 glutathione-disulfide reductase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038322 [exp] 830 / 0 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10036185 [exp] 827 / 0 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 694 / 0 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 687 / 0 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018248 [exp] 404 / 7e-140 AT1G07180 328 / 3e-110 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018249 [exp] 380 / 2e-130 AT2G29990 274 / 3e-89 alternative NAD(P)H dehydrogenase 2 (.1) Lus10018541 [exp] 223 / 4e-66 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 219 / 1e-64 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018427 [exp] 206 / 4e-59 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047100 [exp] 745 / 0 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 697 / 0 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.004G036300 [exp] 697 / 0 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.013G147300 [exp] 218 / 6e-64 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 208 / 2e-60 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G034100 [exp] 208 / 3e-60 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 203 / 2e-58 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147400 [exp] 200 / 2e-57 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.007G098700 [exp] 96 / 7e-21 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G217800 [exp] 49 / 5e-06 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10040657 pacid=23157681 polypeptide=Lus10040657 locus=Lus10040657.g ID=Lus10040657.BGIv1.0 annot-version=v1.0 ATGGCCTGGTTCCGCACCCTGACCCGAATCTCCACCTCCCTCAAATCCTCACCCACTTTCGCCTCTCATCCGTCTCTGCTACTGACATCTCTTTCTTCGC ATTTCAGCACCGCCCCCGGAGCGTCACCGGCGGTCGAAATTCGGCCTCCGAGTTTGGGGGACTTGGAGGCGACGAGGGCAGGGGAGAAGCCGAGGGTGGT GGTGCTGGGATCCGGATGGGCAGGGTGCCGGTTGATGAAGGGCATTGATACTAGCATCTACGACGTCGTTTGCGTGTCGCCGAGGAACCACATGGTGTTC ACGCCGCTGCTTGCGTCGACGTGCGTGGGTACGCTGGAGTTCAGGTCGGTTTCGGAGCACGTGGCCCGGATCCAGCCTGCCATTTCTACCGAACCCGGGT CATACTTCTTCCTGTCTCGTTGCAAGGGGATGGATGCTAAGAATCATGTGGTGAATTGCGAGAGTGTGACTGATGGGCAAACCACCCTGGAGCCATGGAA GTTCAACATAGCGTACGACAAGCTGGTAATCGCCTTGGGAGCAGAGGCCACCACGTTCGGAATCCATGGAGTCAAAGAACACGCTGTCTTCCTCAGGGAA GTTCACCATGCTCAACAAATTCGGAGGAAGCTGCTCCTCAATTTGATGCTGTCAGACATCCCGGGCACTACGGAGCAAGAGAAGAGCAGACTGCTGCACT GCGTCGTAGTCGGAGGTGGACCCACAGGAGTCGAATTCAGCGGCGAGCTTAGTGATTTCATCATGAAAGATGTCCGCAAAAGGCACGCACATGTCAAGGA TTACATCCGTGTTACTTTGATAGAGGCAAATGAGATATTGTCTTCTTTCGACGATCGTTTGCGCCAGTATGCAACCAGGCAGTTGACCAAGTCAGGGGTT CGACTTGTTCGCGGCATAGTGAAGGATGTCGAACCTCACAAGATAATTCTCGACAATGGGACTGAAGTTCCATATGGTTTATTAGTTTGGTCTACTGGCG TTGGCCCTTCGTCTCTAGTGAAATCTCTGGACCTTCCAAAATCTCCAGGTGGAAGGATTGGGATCGACGAATGGCTACGGGTACCTAACATGCCGGATGT GTTTGCAATTGGCGACTGCAGTGGGTTCGTCGAAAGTACCGGCAAACAAGTCCTGCCAGCATTGGCACAGGTTGCAGAGAGGCAAGGGAAATATCTCGCG GCTCAACTAAATCGAATAGGTAAAGCTGGCGGAGGTCGCACAAACAGTGGAGCGGACATGGATGTAGGGGAGCCGTTTGTGTACAAACATATGGGAAGCA TGGCTACAATCGGGCGGCATAAGGCTCTTGTGGATCTTCGGCAAAGCAAAAAGGGTAAAGGAATATCCATGGCTGGTTTCGTAAGCTGGTTCATATGGCG GTCGGCGTATCTTACACGAGTCGTAAGCTGGAGGAACAGGTTCTACGTTGCTGTTAACTGGCTCACAACTATGGTATTTGGCCGCGATATAAGCAGACTA TGA
AA sequence Show only first row Show all	>Lus10040657 pacid=23157681 polypeptide=Lus10040657 locus=Lus10040657.g ID=Lus10040657.BGIv1.0 annot-version=v1.0 MAWFRTLTRISTSLKSSPTFASHPSLLLTSLSSHFSTAPGASPAVEIRPPSLGDLEATRAGEKPRVVVLGSGWAGCRLMKGIDTSIYDVVCVSPRNHMVF TPLLASTCVGTLEFRSVSEHVARIQPAISTEPGSYFFLSRCKGMDAKNHVVNCESVTDGQTTLEPWKFNIAYDKLVIALGAEATTFGIHGVKEHAVFLRE VHHAQQIRRKLLLNLMLSDIPGTTEQEKSRLLHCVVVGGGPTGVEFSGELSDFIMKDVRKRHAHVKDYIRVTLIEANEILSSFDDRLRQYATRQLTKSGV RLVRGIVKDVEPHKIILDNGTEVPYGLLVWSTGVGPSSLVKSLDLPKSPGGRIGIDEWLRVPNMPDVFAIGDCSGFVESTGKQVLPALAQVAERQGKYLA AQLNRIGKAGGGRTNSGADMDVGEPFVYKHMGSMATIGRHKALVDLRQSKKGKGISMAGFVSWFIWRSAYLTRVVSWRNRFYVAVNWLTTMVFGRDISRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	0	1
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	1.0	0.9012
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10001934 [exp]	1.7	0.8669
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	2.0	0.8704
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	2.8	0.8572
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10023208 [exp]	5.9	0.8375
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	8.7	0.8524
AT4G15545			unknown protein		Lus10012775 [exp]	12.8	0.7974
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	15.9	0.8282
AT2G32750			Exostosin family protein (.1)		Lus10010677 [exp]	17.5	0.7614
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	19.4	0.8120

Compare expression of checked genes

Lus10040657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.