Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47300 206 / 8e-68 SELT SELT-like protein precursor (.1) AT5G58640 200 / 2e-65 Selenoprotein, Rdx type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018247 [exp] 216 / 5e-72 AT3G47300 205 / 2e-67 SELT-like protein precursor (.1) Lus10001253 [exp] 184 / 4e-59 AT3G47300 269 / 4e-92 SELT-like protein precursor (.1) Lus10002479 [exp] 184 / 6e-59 AT3G47300 270 / 3e-92 SELT-like protein precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047000 [exp] 214 / 5e-71 AT3G47300 255 / 1e-86 SELT-like protein precursor (.1) Potri.001G253000 [exp] 209 / 1e-68 AT3G47300 253 / 2e-85 SELT-like protein precursor (.1) Potri.016G117600 [exp] 189 / 3e-61 AT5G58640 224 / 4e-74 Selenoprotein, Rdx type (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF10262 [flax] [poplar] Rdx Rdx family
Representative CDS sequence Show only first row Show all	>Lus10040658 pacid=23157797 polypeptide=Lus10040658 locus=Lus10040658.g ID=Lus10040658.BGIv1.0 annot-version=v1.0 ATGGACAGAGTACAGCTTCTACTGTTTGGACTCCCGCTCTTCCTACTGTTTTCCGATCTCAAGCCGGTGATTGGAGGCATCGGTATCGGCGGTACTGTGA AGATTGATTTCTGCTCATCATGCGCTTACAAGGGCACTGCTGTATCGATGACAAAAATGTTGGAGAATCAGTTTCCTGGAGTTGAAGTGATTCTAGCAAA TTATCCTGCGCCACTGCCAAAAAGGATAGCATCTAAGTTGGTTCCGGTTCTGCAAGTTGGGGTGATTGCAGTGGTTGTGGCTGGGGAACATATTTTTCCT ATGATAGGGATCATGGCTCCACCCCCATGGTATCATACGTTGCAGGCAAATAAATTTGGCACCATGGCATCTGTTTGGCTTCTCGGCAATACGTTGCAGT CTTTCCTACAAGGCTCCGGTGCTTTTGAAGTTTACTGCAACAATGAACTGGCCTTCTCGAAGCTGAAGGAAGGCAGGTTTCCAGGAGAGATTGAGTTGCG AGAACTTGTACGCAAAGCATTGACCGGAACCAGCATTTCAAATGCGCGGTGA
AA sequence Show only first row Show all	>Lus10040658 pacid=23157797 polypeptide=Lus10040658 locus=Lus10040658.g ID=Lus10040658.BGIv1.0 annot-version=v1.0 MDRVQLLLFGLPLFLLFSDLKPVIGGIGIGGTVKIDFCSSCAYKGTAVSMTKMLENQFPGVEVILANYPAPLPKRIASKLVPVLQVGVIAVVVAGEHIFP MIGIMAPPPWYHTLQANKFGTMASVWLLGNTLQSFLQGSGAFEVYCNNELAFSKLKEGRFPGEIELRELVRKALTGTSISNAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	0	1
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	2.4	0.8632
AT1G56423			unknown protein		Lus10029844 [exp]	2.6	0.8900
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	4.5	0.8649
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	5.0	0.8613
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021104 [exp]	6.0	0.8546
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	6.5	0.8596
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	6.9	0.8583
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	7.7	0.8600
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	8.4	0.8457
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10004714 [exp]	8.6	0.8130

Compare expression of checked genes

Lus10040658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.