Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 265 / 3e-75 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 258 / 1e-72 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 229 / 1e-61 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT2G28830 78 / 3e-14 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 77 / 6e-14 PUB15 Plant U-Box 15 (.1) AT1G23030 71 / 4e-12 PUB11 ARM repeat superfamily protein (.1) AT3G46510 69 / 1e-11 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 66 / 9e-11 ARM repeat superfamily protein (.1.2) AT1G10560 64 / 5e-10 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT5G01830 62 / 2e-09 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018246 [exp] 1842 / 0 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 295 / 2e-84 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 208 / 2e-56 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 163 / 1e-40 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10005988 [exp] 140 / 2e-33 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 105 / 7e-23 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10039402 [exp] 93 / 8e-19 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 92 / 1e-18 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 85 / 3e-16 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007800 [exp] 305 / 2e-89 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 290 / 6e-84 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G136500 [exp] 209 / 2e-55 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.008G112900 [exp] 203 / 2e-53 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 173 / 6e-44 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 170 / 7e-43 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 132 / 4e-31 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 119 / 5e-27 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 118 / 1e-26 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.003G201000 [exp] 101 / 1e-21 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10040659 pacid=23157870 polypeptide=Lus10040659 locus=Lus10040659.g ID=Lus10040659.BGIv1.0 annot-version=v1.0 ATGACCCCGGCGCCGCCACTCCCGGCCGCCGTCGACTCAATCCACCGCTCACTTTCTGAACTCTGCTCCACCAGCCCCGACCAAGAGTCCTTCGAGAACT CTAAGCAGTTCACCGGCTACGCCCACCGTCTTCAGCTTGTTTTCAGTCAGCTACTCCGGTCCTCGGCGTCACTCGAAGAACTTCCAGCTTCCGTTGAGAC CGGGCTCAGAGGAATCTCCGAGGATCTCTCTGATGCTGCAGAAACAGTTTCTGTGTACAGGAAGAGGAGCAAGATCTTCGTGCTGGTCAACTGCCAGTCA CTTTGCGCGTCTCTACTGGAGCGGACGGTGGCGATGGGGACGTGGCTGGAACTGATTGAGTCCTCGCTGCTTGACGACTTCCTCTCCGATCTTCGCAAGA AGACCTCCGATCTCTCCCGTGACATGAAACAAGCGAAATTCAGAGTGACGGAAAACGAAGAGAGAGTCCGCCGCACATTAGAGAAGGAAGGACAGGGAAG GATGTCGAGCAAAGCTGTGCAAAGCGCGATCATCATGGATTTGGCAAGAGCTCTTGGAATTGATGCGAGTAACCACCAAGAGCTATCTGAGCAAGTGAAG CTGTTCAAAACTGATGTGGCGCGGTCAAGTTCCGTCGCAGAAAGGAGAATTATGATCTCTTTGGAGAAAATTCTTGATAACTGGTCGAGCGACCCTGATT CGGAGGCACTGAATGAGGATTTGAATTCAGAAGATGAAGCTCACTTGTCACCATTCAGGAATTTCCTTTGTCCATTGACCAAAGAATATATGAAGGAACC TGTTGTGGTGTTGGAGTCTTCCCAGAACTATGATAAGAAAGCCATATTATACTGGTTTTCCAGATGTGTTGAGGATGGCCGTGACCCTACTTGTCCTGTC ACTGGGATGGTTCTGAAGACGACGGAACTGAAGCCGAATCTTGGGCTGGCCGGAGCGATAGATGAGTGGATTTGTAGGAACGTCGAAGTCCGTGTTAATT CTTCAGTGGAACATATCAGTAAAGAGCCTTTTGTTAAGGAGTCAATTGAACGTGCATTGGACAGTGTTTACAGGATCTCTGAAGAGCATTCTTCTTATCG GTATAAAGTGAGGAACGCTGGCTTGGTTGTCCTTATTGTCAACTTGCTTCGAAAGTCGTCCAAGGACTTGGGCAGTCGTCTGAGGGGCAAAGCTCTAATG GCTTTGCTTAGCATGGCCAAGGATGAAGAAAGCAAGAAAATGATGCTGGAAGAGGGTGTGACTAGACTAGCTGTACATAGTCTTGTTGGAAATTCAGACA AAGAGAGAGAATATGCTGTGAAGTTATTGCTGGAGTTCAGTAATGATGAAGATTACTGCATCAAAATTACATCAGAAAAGGGAGCACCAGTTCTTCTATC TAGTATGGCAGGCAATCTGGAGAATCCTGCTTTGTCAAATCTTGCAGATGAGTTGTTAAAGAGGATGGAAAGCATGGAAGAGAATGTTCAGGTATTGGCC GCAGCTGGCAGATTCAAGCCCTTGCTTGCTCGTCTATGTGAAGGTTCTGATGACGATAAAATAGGAATGGCATCTATTCTGGGAAAGATGACCTTAACAA ATAGCAGTAAAGAAGAAATTGCGAGGACAAGTGCTAAGATACTTGTTGAGTTGCTTTCTAATCCTGACGCACGGGTACCAAGCTTGAAAGCCTTGTGTAA CCTATCGAGTTTGGATGACAATGCAACTATCCTTGTTGATGCTAATGCACTTCCTGTGCTTACTGAAATCATTTTGGAAAACGAGACCTTGTCGTCATCA AAACTCGTGGAATTGGCCACATCGGCAATCGCGAATATAGTATCGAATCCAGGACACTGGGAGTTGACTGCTGTTGACAAGAGTGGTAATACAATGCAGT CTGCATCGGTCGTCTCGAGTCTTCTTCAGCTTCTATCTGTTGCCTCGTCCCCTGCTCAAGCTTCCATACTCCAAATCCTCTACGGAATAGCATCGTCTCC CAGGGCTGCAGAATCAGTAGCTAGCAGAATCAAGAGTAGTAATGGCATTAAAACAGTGATCAGTTATCTCGAGCACCCAGAAGTTGGACATCGAATCAAC GCTTTTAGGCTTACAAGATTGCTCTCGGAAAGGTTCGCCCAAGCCTTACTCTATGAGCTACAAACTTGTAACAAGAATTCATTGCTGAAAGACAAACTAT TGGATGACCAATCTACAGATACAGAAAGATCAGACTCCGCCTGCATATTGGCTAACCTTCCTTTCTCAGGCGACGAAGTGAAAACACTGCTTGATCCCAG TTTCATAAAATGGATCGTCTCCACTCTCAAAACCCGGAATCGCAACGCCAATGGCAAATCGTCTCGAACTTCATCTTCATCATCGTCAAGCATGACAGAA GGGCTTCTCGGAATACTACTCCGCTTCACCAAACGCCTCAACGATGATCAAACTGTTCTTACCCTGGTGAGAGGGCTTCAACTCATGACCTTACTCCGCG AAGAGCTCGGTTTCCCTTCCAAGCCGAGAATCAAACAGCTAGCTGCTCTTGGACTGAGAAACTTATCAGAATCAGCTACCTGGAATCCGGATCAACAACC TCCTTCACCTCCTCAGGGATTCTGTGTTCCTATAATCTTCATCTGTGGCAGAGTCCCTTCGGAACCGTCGACTTGCCCGATACACAACGAATTCTCCTGT GACGATGAAGGCTCCCAGCTGTGTCTACTAAGTAACGACTGCATCAAGCCATTGATCGATCTTCTTTCGGACGATAATACCAACGTGCAAATCGCAGCAG TGGAGGCATTGTCGACACTCGTACCAGCTGATAATTCGTCCGAGATTACCAAGAGGGGAATGAACGAGTTTGAACAATTGCGGATGGTGGATGCTGTGAT TGATCTGTTCATGAAGCTAAGACCAGGTGAGCTGCAAGAGAAGACGTTATGGATGGTTGACAAGTTCTTGAGAGCAGAAGGTTGTAGCCATAGGCATTCG CTGAACCAGGCGCTAGTTGGAGCTTTGGTCGAGGCGTTGAAGCATGGGAATGGGAACACCAAAAGGTACGCTCAGGATGCCCTGACGAATCTGAAACAGT TGTCCGGTGTTAGCGGGACTGGTTCCTACCAAGTTCCCTCCCAAAGATGA
AA sequence Show only first row Show all	>Lus10040659 pacid=23157870 polypeptide=Lus10040659 locus=Lus10040659.g ID=Lus10040659.BGIv1.0 annot-version=v1.0 MTPAPPLPAAVDSIHRSLSELCSTSPDQESFENSKQFTGYAHRLQLVFSQLLRSSASLEELPASVETGLRGISEDLSDAAETVSVYRKRSKIFVLVNCQS LCASLLERTVAMGTWLELIESSLLDDFLSDLRKKTSDLSRDMKQAKFRVTENEERVRRTLEKEGQGRMSSKAVQSAIIMDLARALGIDASNHQELSEQVK LFKTDVARSSSVAERRIMISLEKILDNWSSDPDSEALNEDLNSEDEAHLSPFRNFLCPLTKEYMKEPVVVLESSQNYDKKAILYWFSRCVEDGRDPTCPV TGMVLKTTELKPNLGLAGAIDEWICRNVEVRVNSSVEHISKEPFVKESIERALDSVYRISEEHSSYRYKVRNAGLVVLIVNLLRKSSKDLGSRLRGKALM ALLSMAKDEESKKMMLEEGVTRLAVHSLVGNSDKEREYAVKLLLEFSNDEDYCIKITSEKGAPVLLSSMAGNLENPALSNLADELLKRMESMEENVQVLA AAGRFKPLLARLCEGSDDDKIGMASILGKMTLTNSSKEEIARTSAKILVELLSNPDARVPSLKALCNLSSLDDNATILVDANALPVLTEIILENETLSSS KLVELATSAIANIVSNPGHWELTAVDKSGNTMQSASVVSSLLQLLSVASSPAQASILQILYGIASSPRAAESVASRIKSSNGIKTVISYLEHPEVGHRIN AFRLTRLLSERFAQALLYELQTCNKNSLLKDKLLDDQSTDTERSDSACILANLPFSGDEVKTLLDPSFIKWIVSTLKTRNRNANGKSSRTSSSSSSSMTE GLLGILLRFTKRLNDDQTVLTLVRGLQLMTLLREELGFPSKPRIKQLAALGLRNLSESATWNPDQQPPSPPQGFCVPIIFICGRVPSEPSTCPIHNEFSC DDEGSQLCLLSNDCIKPLIDLLSDDNTNVQIAAVEALSTLVPADNSSEITKRGMNEFEQLRMVDAVIDLFMKLRPGELQEKTLWMVDKFLRAEGCSHRHS LNQALVGALVEALKHGNGNTKRYAQDALTNLKQLSGVSGTGSYQVPSQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10040659 [exp]	0	1
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	4.8	0.7961
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	7.5	0.7482
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	9.6	0.7560
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	16.1	0.7300
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000444 [exp]	16.3	0.7458
AT1G09195			unknown protein		Lus10010931 [exp]	21.5	0.6912
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	22.6	0.7341
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	29.3	0.7442
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	29.4	0.7341
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	31.6	0.7469

Compare expression of checked genes

Lus10040659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.