Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29980 531 / 0 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 522 / 0 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 517 / 0 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G12120 220 / 3e-68 FAD2 fatty acid desaturase 2 (.1.2) AT4G30950 101 / 2e-23 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018245 [exp] 709 / 0 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10038321 [exp] 635 / 0 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10036184 [exp] 627 / 0 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10027809 [exp] 520 / 0 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10005039 [exp] 463 / 1e-163 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10004176 [exp] 226 / 2e-70 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 226 / 3e-70 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 224 / 5e-70 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10021046 [exp] 220 / 3e-68 AT3G12120 489 / 5e-174 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252900 [exp] 570 / 0 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 541 / 0 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 530 / 0 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 529 / 0 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 529 / 0 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G012401 [exp] 226 / 5e-70 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 223 / 2e-69 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 221 / 1e-68 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 216 / 1e-66 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 178 / 1e-52 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10040660 pacid=23157905 polypeptide=Lus10040660 locus=Lus10040660.g ID=Lus10040660.BGIv1.0 annot-version=v1.0 ATGAGCCCTCCAAACTCCATGGGAATGGAAGCTGCTCATCCTACCGGCAACGGCAATGGCGTCGCAGTCATGAACGGCGCCTCCGCTAACAAACCCGATT TCGATCCCAGCGAGGCTCCTCCCTTCAAGATTGCCGACATCCGAGCCGCCATCCCCCCGCATTGCTGGGTGAAGAATCCATGGAGGTCTCTTAGCTACGT CCTTAGGGACGCCGTCGTCATTCTCGCATTCGCAGCTGCCGCCCTCAAGCTCGACCTCTGGGCTGTTTGGCCGCTCTACTGGATCGCTCAGGGCACCATG TTTTGGGCTGTCTTCGTTCTCGGCCACGATTGCGGCCATGGGAGTTTCTCGGATAGCTGGTGGCTGAACAATGTGGTGGGGCATATTCTGCATTCTGCAA TCCTTGTGCCTTACCATGGATGGAGAATTAGCCACAAAACACACCACCAGAATCATGGCAATGTTGAGAAAGATGAATCATGGGTTCCGCTGCCGGAGAA AGTATACAAGACCCTGGACACAAGCACCAAATTCATGAGGTTCACTATCCCTCTCCCAATGTTTGCTTATCCTATCTACTTGTGGACGAGGAGCCCAGGG AAGAAAGGGTCCCATTTCAACCCCTACAGTGACCTGTTTGCCCCACAAGAAAGGAAATCAGTCTTAATCTCTACCATCTCTTGGATTTCCATGGTCCTAA TCCTCCTCTACGCCTCCTTCCTTTTTGGTTTCCTCACTGTCTTCAAAGTCTATACCGTCCCTTACCTGATATTTGTGGCGTGGCTGGACATGGTGACATA CCTGCACCACCACGGGCACGAAGAGAAGCTGCCGTGGTACAGAGGTCAAGAGTGGAGCTACCTACGTGGAGGGCTGACAACCGTAGATAGAGATTACGGG ATTATCAACAACATCCACCACGACATTGGCACTCACGTGATTCACCATCTGTTCCCTCAAATCCCTCACTACCATCTCGTAGAAGCGACAAAGGCAGCAA AGTCGGTGCTTGGGAAGTACTACAGAGAGCCAAAGAAATCAGGACCATTCCCATTCCACTTGTTCGACAACTTAGTGAGAAGCCTTGGCGAAGATCACTA TGTTAGTGATGCAGGGGATGTCGTGTTCTATCAGTCTGACCCAGAAATCTTCAAGTTTTCCAAGTCCAAGTCAGCCTAA
AA sequence Show only first row Show all	>Lus10040660 pacid=23157905 polypeptide=Lus10040660 locus=Lus10040660.g ID=Lus10040660.BGIv1.0 annot-version=v1.0 MSPPNSMGMEAAHPTGNGNGVAVMNGASANKPDFDPSEAPPFKIADIRAAIPPHCWVKNPWRSLSYVLRDAVVILAFAAAALKLDLWAVWPLYWIAQGTM FWAVFVLGHDCGHGSFSDSWWLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVEKDESWVPLPEKVYKTLDTSTKFMRFTIPLPMFAYPIYLWTRSPG KKGSHFNPYSDLFAPQERKSVLISTISWISMVLILLYASFLFGFLTVFKVYTVPYLIFVAWLDMVTYLHHHGHEEKLPWYRGQEWSYLRGGLTTVDRDYG IINNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKSVLGKYYREPKKSGPFPFHLFDNLVRSLGEDHYVSDAGDVVFYQSDPEIFKFSKSKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10040660 [exp]	0	1
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10018853 [exp]	4.9	0.8072
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	6.7	0.8763
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	7.9	0.8257
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	9.9	0.7711
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	12.0	0.8380
AT5G08415			Radical SAM superfamily protei...		Lus10041005 [exp]	14.5	0.7687
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	24.7	0.8002
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10026484 [exp]	33.9	0.8288
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	53.3	0.7372
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	62.6	0.8139

Compare expression of checked genes

Lus10040660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.