Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58620 322 / 7e-105 C3HZnF zinc finger (CCCH-type) family protein (.1) AT2G40140 284 / 3e-90 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G55980 277 / 6e-88 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT2G41900 244 / 3e-74 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 239 / 4e-72 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT2G25900 167 / 1e-48 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT4G29190 162 / 3e-46 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G19810 161 / 7e-46 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT1G03790 159 / 8e-45 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 150 / 2e-41 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018243 [exp] 406 / 4e-143 AT5G58620 100 / 3e-24 zinc finger (CCCH-type) family protein (.1) Lus10007493 [exp] 328 / 1e-106 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10028970 [exp] 326 / 5e-106 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019709 [exp] 225 / 2e-66 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10035006 [exp] 173 / 4e-50 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 171 / 2e-49 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 162 / 8e-47 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 159 / 3e-45 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 156 / 5e-44 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252600 [exp] 424 / 3e-143 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G046800 [exp] 402 / 4e-135 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.010G187900 [exp] 363 / 5e-120 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.008G069400 [exp] 352 / 9e-116 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.012G145800 [exp] 342 / 5e-112 AT2G40140 585 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.016G053700 [exp] 269 / 2e-83 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 261 / 1e-80 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 256 / 2e-78 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 254 / 1e-77 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 245 / 2e-74 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10040662 pacid=23157676 polypeptide=Lus10040662 locus=Lus10040662.g ID=Lus10040662.BGIv1.0 annot-version=v1.0 ATGTACAGTTTCAAGGTGAAGCCATGCTCGAGGGCGTATTCACACGATTGGACGGAGTGTCCGTTCGTTCACCCAGGCGAAAACGCGCGGCGGAGGGATC CGAGGAAATATCTCTACACCTGCGTCCCTTGCCCGGAGTTTCGTAAAGGTTCCTCCTGCCGGCAAGGAGACTCCTGTGAGTATGCTCACGGGATCTTCGA GTGCTGGCTTCATCCAGCTCAGTACAGAACTCGATTGTGCAAAGACGAGACGAATTGCAATCGACGTGTTTGTTTTTTTGCCCACAAGACGGAGGAGCTT CGTCCGTTGTACGCCTCCACTGGTTCTGCGGTTCCTAATTCTCCGGGAGGACCGTCGAATGCGACGTCGTTTTCGGGTAATGGATTTGATATTGGTTCGT TGACTCCTCCTCCGTTGACCTCCCCTGGCGGTGGCTCGCCGGGATGGCCGACGAGTGTGATTACTCCTCCTCCACCGCAGCTGCAGCTTCCTGGAAGTAG GTTGAAGTCCAGTCTGAGCGCTAGAGATATCGATGTCGATATGGATTTTCTTGGGATAGAAGCTCATCGGAGGAGGAAGCAATTGATGGATGAATTCGCC GGCTTGAGTTCACCATCCGACTGGACTGGCGAACGAACCGGAGAGTTCAACAAAATCGGAGGGTTGAATTTAAATCCGACGAGTCTTGAAGACATATACG GAGCTGTAGATCATCCCCTGCTTCTGTCTCAATTACAGGACATGAAATTGAAGCTCCGATCCACCTACCCGGCGGCTTTCCCGTCGTCTCCGGCGATGGA TCAGACCGGGTTCAATAACAATTCCGGCCGGGCTGCTGCTTTTGCGAAGAGGAGCCAGAGCTTTGTGGGACGGAGCTCGGTGAACCATCATCCGATCGGG TTTCCTACCTCGCCGGGGAAGCTTTCTGATTGGGGATCGCCGGACGGGAAATTGGAATGGAAAATCCAAGGAGAAGAGCTGAGCAGGTTCAGGAAGTCTG CCTCCTTCGCTTACCGCAGCAGCAGCAATGGGAACTTTGGGGAGCCGGATCTGGGTTCGGGTATGAGATCCGGGCAAATGGGTGTTGGGGGTCCGAATCA GCAGCAAGGCCACCCGGATATCGGTATCCCGGAAATGCAGCCTGCTTGGATGGAGCAATTCTATAGCGAGACGGAGCAGATGGTGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10040662 pacid=23157676 polypeptide=Lus10040662 locus=Lus10040662.g ID=Lus10040662.BGIv1.0 annot-version=v1.0 MYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYLYTCVPCPEFRKGSSCRQGDSCEYAHGIFECWLHPAQYRTRLCKDETNCNRRVCFFAHKTEEL RPLYASTGSAVPNSPGGPSNATSFSGNGFDIGSLTPPPLTSPGGGSPGWPTSVITPPPPQLQLPGSRLKSSLSARDIDVDMDFLGIEAHRRRKQLMDEFA GLSSPSDWTGERTGEFNKIGGLNLNPTSLEDIYGAVDHPLLLSQLQDMKLKLRSTYPAAFPSSPAMDQTGFNNNSGRAAAFAKRSQSFVGRSSVNHHPIG FPTSPGKLSDWGSPDGKLEWKIQGEELSRFRKSASFAYRSSSNGNFGEPDLGSGMRSGQMGVGGPNQQQGHPDIGIPEMQPAWMEQFYSETEQMVAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	0	1
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	1.0	0.8802
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	3.5	0.8282
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	4.2	0.7930
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	4.5	0.8406
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	5.2	0.8351
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10031096 [exp]	7.3	0.7690
AT5G64230			unknown protein		Lus10033177 [exp]	8.7	0.8102
					Lus10039654 [exp]	8.7	0.7757
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	11.2	0.8036
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	13.2	0.8042

Compare expression of checked genes

Lus10040662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.