Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 603 / 0 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 362 / 3e-113 CCR4 CRINKLY4 related 4 (.1) AT3G59420 257 / 3e-73 ACR4 crinkly4 (.1) AT1G24030 208 / 3e-60 Protein kinase superfamily protein (.1.2) AT1G67720 218 / 2e-59 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 217 / 4e-59 Leucine-rich repeat protein kinase family protein (.1) AT3G26940 205 / 2e-58 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT3G58690 204 / 3e-58 Protein kinase superfamily protein (.1) AT1G23540 208 / 6e-57 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 206 / 1e-56 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018242 [exp] 1325 / 0 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10028285 [exp] 548 / 0 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10034646 [exp] 385 / 4e-127 AT3G55950 178 / 2e-49 CRINKLY4 related 3 (.1) Lus10029170 [exp] 370 / 4e-116 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10034647 [exp] 343 / 8e-104 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10012995 [exp] 273 / 2e-85 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10000764 [exp] 239 / 8e-67 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 236 / 5e-66 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10038174 [exp] 220 / 4e-62 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252400 [exp] 815 / 0 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 672 / 0 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 655 / 0 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 378 / 3e-119 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 350 / 2e-108 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.017G029900 [exp] 241 / 2e-67 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 238 / 2e-66 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.013G159500 [exp] 230 / 1e-63 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G143100 [exp] 218 / 3e-63 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G159200 [exp] 228 / 1e-62 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040663 pacid=23157709 polypeptide=Lus10040663 locus=Lus10040663.g ID=Lus10040663.BGIv1.0 annot-version=v1.0 ATGACTGCCCACCATCTTACACATTTCGCCTTCCTACTTCTCACCGCCTTCTCCTCCCTCGCCTCCGCCTCCACCGTCGCCGTCACCCATACCAACCCCC CGACGGTGTGCGGAATCGTCGCTGGACAGCCCACTCAGTACATCCAATGCTTCCACTACGGCCAATCCACTTCAATCCAACCCACCAATCTCTCCTTCGA ATCTATCTCCGGCGGCCTCACCTTCTTCTGCGGCCTCGTCTCCGGCGGCCTCAGCCTCCTCTGCTGGGACATCGACGATTCAGGGTACTACTCGACCGCC TTCCGCCCCAGACGAATCTACCACAGCAATACAGTCGCTCTGACGGATTTGACCCTCGGCAGCAGCGGCCAGGTATGCGCTAGAGAGGTCGATTCCGGAA TTGCCAAATGCTGGCGTGGTTTAGGGTTTCCGGATCCTGATCCGGATTTGTCCTTCAGTTCGATTACCGCCGGCGACGGGTTCGCCTGTGGGATTTTGAC GAATGACAGTACGGTTCACTGCTGGGGGAATCATTATAATAATAATGATAATGATTCTTCCATGATGATTCAGTCTCAATTCGGAGATTTGAAAATGGAG AGCTTAGTTGCTGCGAAATCTCATAAGCATGTTTGTGGCTTGACGAATTCAGGGGATTTGGTATGCAAAGGGATGAACGAATCGGGTCAATTGAACGTTC CGGTGACTTCGGATTTTGAATTCTCCTCCGGTTTAGCTGCCGGGTCGGATTTCAACTGTGCGATTAGGGAGAAGAATGGGCTGTTGACTTGCTGGGGAAG AGGAGTGAACCGGGTTCAACTTAACGTCACCGGTAACGGAGGAGATTCAGATTCGTTCGAATCTGTTTTCGCTAGCTCGGATTTCGTCTGCGGCTTGACG ACGGGGAATTTAACGGTCACGTGCTGGGGAATCGGATGGACCGATTTCGACGGTAATCCGAGTGAGCTTCCGTTAGGGATTGTGATTCCCGGTCCTTGTG TTCAATCTTCTTGTACTGATTGTGGATTGTATCCGAATTCTGAAGCACTCTGCTCCGGGTCGGGCAATATCTGCAAATCATGCCCGGTCCACCTTCCGGT TGCGGCCCCATTACCTCCGATTCTGAACATACCTCCATCGACCTCACCGCCGCCGTTTGAAGAGTCCGGTTCTGCTCCTCCACCGGCGCCACCGCCGCCT TCAGGAAATCCTCTCCCTGTAGCAATCGTCGTGCTCGGTTCCGTCGGTGCTTTCGCGGGACTCTGCAGCATTGCGTTCTTCGTAGCCGGAATCGTTCGTC AACGGAATAGAAATTCCGTCCAACCGTCATCCGCAGCCGCCGCGGCAACGACAGCAGCGGGAATTCCAGCTGTTCCACTCTCCTGGCGGCAGAGGAGCGG ATCGTCGTCTAAATACACAGAATACAGAACAGAGAATTTCTCCCTGTCCGAATTAGCAGTGGCGACGGACGATTTCTCACCGGACAACAAGATCGGCACG GGGAGCTTCGGCGTCGTCTACAAGGGGAAACTCGCCGATGGTCGGGAAGTCGCGATCAAGAGAGGGGAAGCAACGACGAGGATTAAAAAATTGAAGGAGA AAGAGAGCGCGTTTGATTCGGAGCTCGCTCTGCTGTCGCGACTCCACCATAAGCATCTGGTGGGACTCATCGGATTCTGCGAGGAATTCAACGAACATTT GTTGATCTACGAGTACATGGCGAACGGAGCTCTCTACGACCACCTCCACCGCCAAAAGGGGCAAAACGATGCCGTATCGACGGCGGGGATAATTTTGAAT TCGTGGAAAATGAGGATCAAGATCGCACTGGATGCATCTAGAGGGATCGAGTACCTCCACAATTACGCTGTCCCGCCGATAATTCATCGGGACATTAAAT CGTCTAACATTTTGTTGGACGCGAACTGGACTGCCCGAGTTTCAGATTTCGGGCTGTCGTTGATGGGACCGGAGAATGACGGAGGGCAGCATTTCATGTC GACGAAGGCGGTGGGGACGGTCGGGTATATCGACCCGGAGTACTACGTGTCGAATGTGTTGACGACGAAGAGCGACATTTACGGGCTGGGGGTGGTGTTG TTGGAGCTTTTGACGGGGAAGAGGGCGGTGTTCAGGAACGGTGAGGAGGACGGGGGAGGGCCGATCGGGATAGTGGAGTATGCGGCGCCGTTGATTTTGG CGGGGGAATTGGAGGCGGTGCTGGATAAACGGGTCGGGTTGCCGCGGTCGTACGAGGCGGAGGCGGTGGCGATCATGGCGGGGCTGGCGGCGGAGTGTGT GAACTTGGAAGGGGTGGAGAGGCCCGACGTTGTTGACGTCGTGGGGAATTTGGAGAGGGCTTTTGGTCTTTGCCAAGAGTTTCAGGCAACATTCTCCAGT GGTTCATTGTCGGATTGA
AA sequence Show only first row Show all	>Lus10040663 pacid=23157709 polypeptide=Lus10040663 locus=Lus10040663.g ID=Lus10040663.BGIv1.0 annot-version=v1.0 MTAHHLTHFAFLLLTAFSSLASASTVAVTHTNPPTVCGIVAGQPTQYIQCFHYGQSTSIQPTNLSFESISGGLTFFCGLVSGGLSLLCWDIDDSGYYSTA FRPRRIYHSNTVALTDLTLGSSGQVCAREVDSGIAKCWRGLGFPDPDPDLSFSSITAGDGFACGILTNDSTVHCWGNHYNNNDNDSSMMIQSQFGDLKME SLVAAKSHKHVCGLTNSGDLVCKGMNESGQLNVPVTSDFEFSSGLAAGSDFNCAIREKNGLLTCWGRGVNRVQLNVTGNGGDSDSFESVFASSDFVCGLT TGNLTVTCWGIGWTDFDGNPSELPLGIVIPGPCVQSSCTDCGLYPNSEALCSGSGNICKSCPVHLPVAAPLPPILNIPPSTSPPPFEESGSAPPPAPPPP SGNPLPVAIVVLGSVGAFAGLCSIAFFVAGIVRQRNRNSVQPSSAAAAATTAAGIPAVPLSWRQRSGSSSKYTEYRTENFSLSELAVATDDFSPDNKIGT GSFGVVYKGKLADGREVAIKRGEATTRIKKLKEKESAFDSELALLSRLHHKHLVGLIGFCEEFNEHLLIYEYMANGALYDHLHRQKGQNDAVSTAGIILN SWKMRIKIALDASRGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMGPENDGGQHFMSTKAVGTVGYIDPEYYVSNVLTTKSDIYGLGVVL LELLTGKRAVFRNGEEDGGGPIGIVEYAAPLILAGELEAVLDKRVGLPRSYEAEAVAIMAGLAAECVNLEGVERPDVVDVVGNLERAFGLCQEFQATFSS GSLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	0	1
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	1.4	0.9709
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	3.5	0.9602
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	3.5	0.9705
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	3.7	0.9621
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	5.5	0.9642
AT2G25680		MOT1	molybdate transporter 1 (.1)		Lus10016331 [exp]	6.0	0.9414
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	7.3	0.9703
AT2G41610			unknown protein		Lus10030172 [exp]	8.9	0.9698
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	9.2	0.9628
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10002620 [exp]	11.7	0.9566

Compare expression of checked genes

Lus10040663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.