Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58700 714 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT2G40116 695 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT3G08510 690 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 684 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58690 675 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT5G58670 575 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 544 / 0 ATPLC1 phospholipase C1 (.1) AT3G47290 386 / 4e-128 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 371 / 3e-122 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1) AT2G21010 45 / 0.0001 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018240 [exp] 755 / 0 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10009894 [exp] 731 / 0 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10028287 [exp] 728 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10014845 [exp] 727 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10018241 [exp] 722 / 0 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10009891 [exp] 718 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 703 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10036182 [exp] 603 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 588 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252100 [exp] 855 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.010G188900 [exp] 727 / 0 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.010G188800 [exp] 726 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.008G068400 [exp] 724 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.008G068300 [exp] 709 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252300 [exp] 649 / 0 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 558 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 88 / 4e-21 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3) Potri.004G174600 [exp] 45 / 0.0001 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.009G134200 [exp] 44 / 0.0002 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0384 [flax] [poplar] PLC PF00387 [flax] [poplar] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [flax] [poplar] EF_hand PF09279 [flax] [poplar] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Lus10040664 pacid=23157629 polypeptide=Lus10040664 locus=Lus10040664.g ID=Lus10040664.BGIv1.0 annot-version=v1.0 ATGGGGAGCTACAGAATGTGCGGCTGCTTCGTCAGGAAGTTCAGAGTCTCCGAGGCTGGCCCTCCGCCGGACGTTAGGGACGCTTTTAGAAAGTACGCCG GCGGCGGTCTTTTGATGACCGTCGATCAGCTCCGCCTCTTCCTATCCGAAGTCCAGGGCGAAGGCGACTGCATTTCCGACGCCGCCGAGAAGATCGTAGC GTCGATTCTTCACAAGCGGCATCATCTCGTCGGCAGGTTTGGTAGAAATGGTCTTACCGCCGACGATTTCTATCGTTATTTGTTCTCCGCCGATCTCAAC CCCGCAACCGTCGCCGATCAGGTGTATCAGGACATGACCAAGCCATTATCCCATTACTTCATATACACAGGACACAATTCTTACTTAACTGGGAACCAGC TCAACAGTGATTGCAGCGATGTTCCAATCATCAAGGCGTTGAAGAAAGGGGTGAGAGTGATTGAGCTCGACCTCTGGCCGAATTCGGATAGAGAAGAAAT CCACGTCCTACATGGAAGGACATTGACTACTCCTGTGGAAGTGCTAAGATGTTTGAGGTCCATAAAGGAGTATGCGTTCGAAGCTTCTCCGTATCCAGTA ATAATTACCCTAGAAGATCACCTCACCACAGGACTTCAAGCTAAAGTTGCTCAGATGATCAAAGATACGTTTGGGGATATGCTGTACTGTCCTGAAGCTG AGTGTTTGGAAGAGTTCCCTTCACCGGAAGATTTGAAGTATAGGGTAATTATTTCAACAAAGCCTCCCATGGAATACCTCAAGTCTAAGAGTTCAAGGAG AAAGCGGAGTAAATCACAGAAGGAAAAGGACTCCGAGGATGATACGTGGGGGAAGGAAGTGTCGGTTGTCTCAACCGATCGCGATGATAGTGGTTTGCTT TCTATCAAGAGTAGTAGTGATTCGAGCGAATATACAGATGATGAGCTAGTCCCACTAGCAGCATCTGACTACAAGCGTGTAATAGCCATCCATGCTGGGA AGCCAAAGGGTGGTTTGAAGCAGGCTCTTAAAGTTGATGAAAACAAAGTTAGACGGCTTAGTTTGAGTGAACAAAAGCTCGAAAAGGCTACCGAGAATCA TGGAAAAGAGGTTATTAGATTCACGCAGAAGAATATATTGAGGGTGTTTCCTAAAGGTACTCGAGTCACGTCTTCTAACTACAAGCCCCTAATTGGTTGG ATGCACGGAGCTCAAATGGTTGCCTTCAATATGCAGGGATATGGAAGAGCTCTTTGGTTGATGCATGGAATGTTCAGGTCCAATGGAGGATGTGGATATG TCAAGAAGCCTGATATTCTGATGAATCCTGATAAATTATTCAACCCCAAATCCCAACTACCTGTAAAGAAAACATTGAAGGTTAAAGTCTACAGTGGAGA TGGATGGCACTTGGATTTCAAACAGACGCATTTCGACAAATACTCTCCTCCAGATTTCTACACCAGGGTGGGAATAGCAGGGGTGCCAGACGACGTGGTA ATGAAGAAAACAGAAGTAAAAGAGGACGACTGGACCCCGGTCTGGAACGAAGAGTTCACATTCCCATTGACAGTTCCTGAACTGGCATTATTGAGAATCG AAGTTCACGAATACGACATGTCCGAGAAGGATGATTTCGGCGGTCAAACTTGTTTGCCAGTCTCGGAACTGAGACCGGGAATTCGAGCAGTCCCGCTGTT TAGCAGGAAGGGCGAGAAGTACAATTCGGTGAAACTCCTGATGCGGTTCGAGTTTGTCTAG
AA sequence Show only first row Show all	>Lus10040664 pacid=23157629 polypeptide=Lus10040664 locus=Lus10040664.g ID=Lus10040664.BGIv1.0 annot-version=v1.0 MGSYRMCGCFVRKFRVSEAGPPPDVRDAFRKYAGGGLLMTVDQLRLFLSEVQGEGDCISDAAEKIVASILHKRHHLVGRFGRNGLTADDFYRYLFSADLN PATVADQVYQDMTKPLSHYFIYTGHNSYLTGNQLNSDCSDVPIIKALKKGVRVIELDLWPNSDREEIHVLHGRTLTTPVEVLRCLRSIKEYAFEASPYPV IITLEDHLTTGLQAKVAQMIKDTFGDMLYCPEAECLEEFPSPEDLKYRVIISTKPPMEYLKSKSSRRKRSKSQKEKDSEDDTWGKEVSVVSTDRDDSGLL SIKSSSDSSEYTDDELVPLAASDYKRVIAIHAGKPKGGLKQALKVDENKVRRLSLSEQKLEKATENHGKEVIRFTQKNILRVFPKGTRVTSSNYKPLIGW MHGAQMVAFNMQGYGRALWLMHGMFRSNGGCGYVKKPDILMNPDKLFNPKSQLPVKKTLKVKVYSGDGWHLDFKQTHFDKYSPPDFYTRVGIAGVPDDVV MKKTEVKEDDWTPVWNEEFTFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELRPGIRAVPLFSRKGEKYNSVKLLMRFEFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10040664 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10019247 [exp]	6.2	0.8014
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10030667 [exp]	9.4	0.7651
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	11.8	0.7497
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	41.0	0.7176
AT2G22760	bHLH	bHLH019	basic helix-loop-helix (bHLH) ...		Lus10006085 [exp]	44.9	0.7162
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	47.5	0.7490
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	56.4	0.7172
AT4G28290			unknown protein		Lus10018592 [exp]	59.4	0.7132
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	61.0	0.7261
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	64.8	0.7142

Compare expression of checked genes

Lus10040664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.