Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07220 647 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT5G23850 387 / 2e-129 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 372 / 8e-124 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 358 / 1e-117 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61270 346 / 5e-114 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 345 / 1e-113 DTA2 downstream target of AGL15 2 (.1.2) AT3G61280 335 / 3e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT2G45840 329 / 2e-107 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61290 316 / 4e-103 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018239 [exp] 912 / 0 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039228 [exp] 375 / 2e-125 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 353 / 1e-116 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 335 / 1e-110 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 310 / 3e-100 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10037863 [exp] 305 / 5e-98 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 237 / 1e-73 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 236 / 9e-70 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 201 / 1e-58 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252000 [exp] 675 / 0 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.003G125000 [exp] 374 / 7e-125 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.015G144400 [exp] 374 / 1e-124 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 370 / 3e-123 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.002G157800 [exp] 343 / 5e-113 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157900 [exp] 335 / 3e-110 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 49 / 5e-07 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10040665 pacid=23157594 polypeptide=Lus10040665 locus=Lus10040665.g ID=Lus10040665.BGIv1.0 annot-version=v1.0 ATGGCGGCTCCTCCGAGACTCTCCCCTCCTCGCACGCCGTCCTACCTCCTCTCTTCCCTCCTCGCTTTAGCCCTCTTCACCTTCTTCTTCCTCTATAAGG TGGACGACTTCGCGACGAACACCAAAACAATCGCCGGACACAACCTGGAGCCGACACCATGGCACGTCTTCCCCGCTAAAAACTTCGACGACGAGACCCG CCACACCCGAGCTTACAAGATCATCCAATGTTCTTACCTCAGCTGTCCATATTTCAACAGGACGATTACAGAGCCGCCTCAGTTTGTTTCTTCCTCTTCC TCCAAACCGGCTGCTGCTCAGCAATGTCCTGAATTCTTCAGCTACATCCACCGCGATCTGGAGCCGTGGGCTAAGTCCGGGATCACCGAAGATCAGCTCA TGGAGGCGAAGAACTTCGCTGCGTTCAGGATCGTTATCTACCAAGGGAAGCTCTACTTCGACCCTTACTATGCTTGCTTCCAGAGCCGTATGATGACGAC GATCTGGGGGTTCCTGCAGCTTTTGAAGAAGTATCCTGGCATGGTTCCTGATGTTGATCTGATGTTTGATTGTATGGATAAGCCGATCTTCAACCGGACT GAGCATCAGGCGAATCCTGTGCCGTTGTTTCGGTATTGCACCACCCGTGAGCATTTCGACATTCCTTTCCCTGATTGGTCCTTCTGGGGATGGTCAGAGA TCAATATCAGGCCGTGGAGTGAGGAGTTTCCTGATATAAAGAAGGGCTCTCAGGCGAAAAGATGGGCGAAAAGGCAGCCGCATGCATTCTGGAAGGGGAA TCCGGATGTTGTTTCCCCTGTTCGTTTGGAGTTGCTGCAGTGTAATGACTCCAGGAAATTTGGAGCACAGATTATGAGACAGGATTGGGTACAAGAAGCC AAAGAAGGTTTTGAGGCTTCCAAGCTATCGAATCAGTGCAACTATCGGTACAAGATATATGCAGAAGGCTTTGCCTGGTCAGTGAGCTTGAAGTATATCA TGTCATGCGGCTCCCTTACCTTTATAATTACACCACAGTATGAGGATTTCTTTAGCCGTGGTCTGATTCCCAAGAAGAATTATTGGCCAGTATCTCCTTT CGAGTTGTGTAAATCTATAAAGTCAGCTGTTGACTGGGGAAATTCACACCCAGCTGAGGCTCAGGCAATAGCAAAAGCAGGACAGAACTACATGGAAAGC ATAAGCATGGACAGAATCTACGACTACATGTTCCACCTGATCTCGGAATATTCGAAGCTACAGAAGTTCAAGCCTGTCCCGCCGACCACCGCTCTCGGGG TGTGTCCAGATTCCGTGCTGTGCTTTGCAGACGAGAAACAGAGGATGTTCCTCGAAAAGTCGACGACTTCTCCCTCGTCGGAGCCTCCTTGCAACCTCCG GCCTGCTGGAGACAGCAACATCCAACGTTGGCTGGACGAGAAGGAGAGATTGCAGGAGGAAGTGAGACAAATGCAGCCGCAGCAGCAGCCGCCTCAACCA TGA
AA sequence Show only first row Show all	>Lus10040665 pacid=23157594 polypeptide=Lus10040665 locus=Lus10040665.g ID=Lus10040665.BGIv1.0 annot-version=v1.0 MAAPPRLSPPRTPSYLLSSLLALALFTFFFLYKVDDFATNTKTIAGHNLEPTPWHVFPAKNFDDETRHTRAYKIIQCSYLSCPYFNRTITEPPQFVSSSS SKPAAAQQCPEFFSYIHRDLEPWAKSGITEDQLMEAKNFAAFRIVIYQGKLYFDPYYACFQSRMMTTIWGFLQLLKKYPGMVPDVDLMFDCMDKPIFNRT EHQANPVPLFRYCTTREHFDIPFPDWSFWGWSEINIRPWSEEFPDIKKGSQAKRWAKRQPHAFWKGNPDVVSPVRLELLQCNDSRKFGAQIMRQDWVQEA KEGFEASKLSNQCNYRYKIYAEGFAWSVSLKYIMSCGSLTFIITPQYEDFFSRGLIPKKNYWPVSPFELCKSIKSAVDWGNSHPAEAQAIAKAGQNYMES ISMDRIYDYMFHLISEYSKLQKFKPVPPTTALGVCPDSVLCFADEKQRMFLEKSTTSPSSEPPCNLRPAGDSNIQRWLDEKERLQEEVRQMQPQQQPPQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	0	1
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	3.2	0.8815
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	4.2	0.8751
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	6.3	0.8631
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	7.9	0.8637
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10016493 [exp]	7.9	0.8296
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	9.2	0.8733
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	10.5	0.8666
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	12.5	0.8542
AT3G16940	CAMTA		calmodulin binding;transcripti...		Lus10016873 [exp]	13.0	0.8314
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	13.2	0.8641

Compare expression of checked genes

Lus10040665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.