Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58710 322 / 2e-113 ROC7 rotamase CYP 7 (.1) AT2G29960 321 / 4e-113 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G55920 281 / 8e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 230 / 9e-78 ROC1 rotamase CYP 1 (.1) AT2G21130 229 / 4e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 222 / 2e-74 ROC3 rotamase CYP 3 (.1.2) AT4G34960 220 / 8e-73 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 214 / 2e-71 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 207 / 2e-68 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT5G13120 208 / 1e-67 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018238 [exp] 385 / 4e-138 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 315 / 2e-110 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10036180 [exp] 294 / 8e-102 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10014846 [exp] 285 / 8e-98 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10030408 [exp] 281 / 6e-96 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007579 [exp] 228 / 7e-77 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 224 / 3e-75 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10022012 [exp] 224 / 4e-75 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 221 / 1e-73 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046500 [exp] 348 / 8e-124 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 323 / 8e-114 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.010G189000 [exp] 308 / 2e-107 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G130100 [exp] 227 / 3e-76 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G173500 [exp] 226 / 4e-75 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 223 / 6e-75 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.009G132800 [exp] 223 / 3e-74 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 221 / 4e-74 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 221 / 5e-74 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 217 / 2e-72 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10040666 pacid=23157917 polypeptide=Lus10040666 locus=Lus10040666.g ID=Lus10040666.BGIv1.0 annot-version=v1.0 ATGAACTCGAAATCTTTGGCCGTCGCTCTGTTATGGGGTGCTCTACTTTTCGGAACCCTAGCGCTCATCCAGGCTAAGAAATCGGACGAGAAGTTGAAAG AGATCACTCATAAAGTTTATTTCGATGTAGAGATCGACGGCAAGCCCGCCGGTCGCATTACCATGGGTCTCTATGGCAAGGCAGTTCCTAAGACAGCAGA GAATTTCAGAGCATTGTGCACAGGTGAAAAGGGCGTTGGAAAGAGTGGGAAACCTCTACACTACAAGGGTAGCTCATTCCACAGGATCATTCCTAGCTTT ATGCTCCAAGGAGGTGACTTCACACATGGTGATGGAAGAGGAGGGGAGTCAATATATGGGGAGAAGTTCGCTGACGAGAACTTCAAGTTGAAGCACACTG GCCCTGGACTTCTGTCAATGGCGAACGCCGGTAAAGACACCAATGGTTCACAGTTCTTCATCACAACTGTTACAACTAGCTGGCTGGACGGCAGGCACGT CGTGTTCGGAAAGGTGCTATCCGGAATGGATGTTGTGTACAAAGTTGAAGCGGAAGGCAAGCAAAGTGGGACACCAAAGAGCAAGGTCGTCATTGTTGAC AGCGGCGAACTACCTCTATAA
AA sequence Show only first row Show all	>Lus10040666 pacid=23157917 polypeptide=Lus10040666 locus=Lus10040666.g ID=Lus10040666.BGIv1.0 annot-version=v1.0 MNSKSLAVALLWGALLFGTLALIQAKKSDEKLKEITHKVYFDVEIDGKPAGRITMGLYGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSSFHRIIPSF MLQGGDFTHGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGKQSGTPKSKVVIVD SGELPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	0	1
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	3.6	0.9294
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	4.7	0.9282
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	4.9	0.9132
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10027540 [exp]	5.7	0.9148
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010296 [exp]	6.9	0.8912
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	7.0	0.9115
AT1G79390			unknown protein		Lus10001759 [exp]	7.5	0.8985
AT5G49210			unknown protein		Lus10032604 [exp]	8.9	0.9082
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	12.2	0.9036
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	13.8	0.9139

Compare expression of checked genes

Lus10040666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.