Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29950 107 / 9e-31 ELF4-L1 ELF4-like 1 (.1) AT2G40080 92 / 4e-25 ELF4 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) AT2G06255 77 / 4e-19 ELF4-L3 ELF4-like 3 (.1) AT1G17455 76 / 1e-18 ELF4-L4 ELF4-like 4 (.1.2) AT1G72630 72 / 4e-17 ELF4-L2 ELF4-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018237 [exp] 216 / 1e-73 AT2G29950 112 / 6e-33 ELF4-like 1 (.1) Lus10028288 [exp] 90 / 4e-24 AT2G40080 110 / 1e-32 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) Lus10000408 [exp] 84 / 9e-22 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10000371 [exp] 84 / 1e-21 AT1G17455 140 / 2e-44 ELF4-like 4 (.1.2) Lus10001250 [exp] 84 / 1e-21 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251600 [exp] 132 / 1e-40 AT2G29950 109 / 6e-32 ELF4-like 1 (.1) Potri.009G046400 [exp] 121 / 2e-36 AT2G29950 99 / 6e-28 ELF4-like 1 (.1) Potri.008G068200 [exp] 105 / 3e-30 AT2G40080 112 / 2e-33 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) Potri.003G063900 [exp] 83 / 2e-21 AT1G17455 156 / 7e-51 ELF4-like 4 (.1.2) Potri.001G170100 [exp] 82 / 4e-21 AT1G17455 158 / 1e-51 ELF4-like 4 (.1.2) Potri.006G143800 [exp] 81 / 2e-20 AT1G17455 166 / 1e-54 ELF4-like 4 (.1.2) Potri.019G131700 [exp] 69 / 6e-16 AT2G06255 107 / 2e-31 ELF4-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07011 [flax] [poplar] Elf4 Early Flowering 4 domain
Representative CDS sequence Show only first row Show all	>Lus10040667 pacid=23157766 polypeptide=Lus10040667 locus=Lus10040667.g ID=Lus10040667.BGIv1.0 annot-version=v1.0 ATGGACGACACCCTAACCACCACCACCAAATCAACCAAAGCTCGCTCCGGCATCACAGCCACCAACTCCGCCAAAAGCAGTCAGCAGCACCGGCTGAAGA GGAACTCGATCGGGGATTTCGAGTCGGAGGAGGGGCAGGAGGAGTGTGACAAAGAGGCATGGGTCGCGCTGAACAAGAGTTTCAGGCAGGCGCAGAGCGT GTTGGATCAAAATCGTGACCTGATCCATCAGGTTAACGAGAACCACCAATCGAAGATCCCGGCGAATCTGAGCAGGAACGTCTCCCTGATAAACGACATC AACGGGAACATCTCCAAAGTCATGTCGATTTACTCCGACTTATCTGTCAATTTCGCAAACGCTGTGCAGGAACGGCGCCGGAGCAATGACGAAGGAGGCG GATGCGGCAATTAG
AA sequence Show only first row Show all	>Lus10040667 pacid=23157766 polypeptide=Lus10040667 locus=Lus10040667.g ID=Lus10040667.BGIv1.0 annot-version=v1.0 MDDTLTTTTKSTKARSGITATNSAKSSQQHRLKRNSIGDFESEEGQEECDKEAWVALNKSFRQAQSVLDQNRDLIHQVNENHQSKIPANLSRNVSLINDI NGNISKVMSIYSDLSVNFANAVQERRRSNDEGGGCGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10040667 [exp]	0	1
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10040454 [exp]	1.4	0.8862
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10023569 [exp]	2.0	0.8718
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	3.5	0.7659
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	5.5	0.7625
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	6.3	0.6723
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10018237 [exp]	7.7	0.7633
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10019077 [exp]	8.1	0.7171
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Lus10040780 [exp]	9.9	0.7103
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	16.9	0.6563
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	22.6	0.7030

Compare expression of checked genes

Lus10040667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.