Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58720 389 / 3e-130 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) AT3G15390 101 / 7e-23 SDE5 silencing defective 5 (.1.2) AT2G26280 61 / 1e-09 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018236 [exp] 795 / 0 AT5G58720 417 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10018188 [exp] 99 / 5e-22 AT3G15390 241 / 1e-73 silencing defective 5 (.1.2) Lus10025646 [exp] 75 / 3e-14 AT3G15390 159 / 6e-44 silencing defective 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046300 [exp] 518 / 0 AT5G58720 418 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Potri.001G401900 [exp] 115 / 4e-27 AT3G15390 273 / 2e-85 silencing defective 5 (.1.2) Potri.011G051300 [exp] 106 / 2e-24 AT3G15390 271 / 5e-85 silencing defective 5 (.1.2) Potri.004G042100 [exp] 74 / 1e-13 AT3G15390 271 / 2e-85 silencing defective 5 (.1.2) Potri.006G218900 [exp] 58 / 8e-09 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1) Potri.018G047700 [exp] 57 / 2e-08 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [flax] [poplar] DUF1771 Domain of unknown function (DUF1771) PF01713 [flax] [poplar] Smr Smr domain
Representative CDS sequence Show only first row Show all	>Lus10040668 pacid=23157672 polypeptide=Lus10040668 locus=Lus10040668.g ID=Lus10040668.BGIv1.0 annot-version=v1.0 ATGAAGGCGCAGACCAAGAGGAAGAAGAGGCGTCCCTCACGCGCCGCCTCCTCTACCCCCGCCAAAGCTCAGCCGAGCCCCCCCGCCCGGCAGCAGGAGG AGGATGAGCGCAAGGTTGTCCTAGCGCTGATGGAGGCTTTTGACTCAATTTCGATAGAGGACGCTTCTGCCGCCTACAAGGAAGCGAAAGGTGACGTCGA CAAGGCTGCCGACATTTTAGCCAGCTTGACCGAGGATCCTTCGACGAGCTCCGTCTCCAGCGGGATTTCCGGCTTCGATTCCGGCTCTGGATCCGGGAGC TCTAGCGGTTCTGCTTCCAGTTCGGGATCTTCCGAAGGGTGTATGGAAGGTCGTTTGGTTGGCGGGCAGGGGTTTCGAGGGAGTCATCATAAGCAGAAGA GAGTGGTGGCTGTGACTGGTACGGTTTCTACTATGTTGGGGAAGGAGTATGTGAAGGCTAGCCAGAGGAGGGATTCCTCGAAGAAGAAGGAGCTGTTCCA GTTTGGAAATGGCGCCTCTCAGAGAGATGAGGCTGAGCAGTTTCTGTGTTCCATGCTTGGTGATGAGTGCGAGCTGAATCTAGCTGTTGTTAAAGACGTC TTATGTCAATGTGGTTACAACGTTGAGAAGGCCATGGATGCCTTGCTTGATTTATCCGGTTCCTCCTCAGAGCAAAGCAGTAACTACAATTCCGCTGCAG AACCTGGAAATCAGAAGGGACATATGGAGTACGCTGACAATTTGGCAGACAAGGCTTCTGATAGCACATCGTATTCATCTGCAAGTGATCAGTATGAGAG CATCTGGGATTATGGATACAGGAATTATGCTCAAGTTCTCACTGATTCTCAAGCTCCCTCCTGTACTAGTCCGAGAACTAGCAAATCAGAGATCCCTCAG AAAGTGCTGGATTCTTTGTATAGCATTACGAAGAGTTCCACACATGAACCGCATTCTATGAATTGGAAGAATATAGTAAAGAAAATGAAATCACTTGGGC CCGCTGATGTTTCACCAAGCACTGAGGTGTCTCACCAAGACATCAATACTAAAGGCAATGAGTACCACATCTTGAGAGAGTCGGCAAAACAACACTGGGA TTCCATGAGATCCTACTATCACAGGGCTGCTACAGCTTATTCAAAGGGGGAAAAGCAGTATGCAGCTTATCTGTCCGATCAGGGGAGATCGCAGACAAAA TTGGCTCAAGAAGCTGATAAGAAGGCTACCATGGATATCTTCAAGGCTAGGAACACGGAAATAAAAAACATGATTACAATTGATTTGCATGGTCAACATG TCAAACAAGCTATGAAGGTTTTGAAGCTTCACCTTCTGTTTGGATCTTACGTTAACTCAATTCAAGTCCTCAGAGTAATTACAGGATGTGGGAGTCACGG TTTCGGAAAGTCGAAGCTGAAACAATCTGTGGTTCAACTGTTGGAAAGCGAACATATGGAGTTTAGTGAGGAGAACCAAGGGACTCTGCTAATCAAGATT GACGGAAGCAAAGAGTACAGCTTTATGGATTCAGATAGTGATGATGAGAGTAACTGA
AA sequence Show only first row Show all	>Lus10040668 pacid=23157672 polypeptide=Lus10040668 locus=Lus10040668.g ID=Lus10040668.BGIv1.0 annot-version=v1.0 MKAQTKRKKRRPSRAASSTPAKAQPSPPARQQEEDERKVVLALMEAFDSISIEDASAAYKEAKGDVDKAADILASLTEDPSTSSVSSGISGFDSGSGSGS SSGSASSSGSSEGCMEGRLVGGQGFRGSHHKQKRVVAVTGTVSTMLGKEYVKASQRRDSSKKKELFQFGNGASQRDEAEQFLCSMLGDECELNLAVVKDV LCQCGYNVEKAMDALLDLSGSSSEQSSNYNSAAEPGNQKGHMEYADNLADKASDSTSYSSASDQYESIWDYGYRNYAQVLTDSQAPSCTSPRTSKSEIPQ KVLDSLYSITKSSTHEPHSMNWKNIVKKMKSLGPADVSPSTEVSHQDINTKGNEYHILRESAKQHWDSMRSYYHRAATAYSKGEKQYAAYLSDQGRSQTK LAQEADKKATMDIFKARNTEIKNMITIDLHGQHVKQAMKVLKLHLLFGSYVNSIQVLRVITGCGSHGFGKSKLKQSVVQLLESEHMEFSEENQGTLLIKI DGSKEYSFMDSDSDDESN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58720			smr (Small MutS Related) domai...		Lus10040668 [exp]	0	1
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	2.6	0.8847
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10021362 [exp]	3.5	0.8648
AT2G14255			Ankyrin repeat family protein ...		Lus10020505 [exp]	6.0	0.8497
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	6.0	0.8799
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	8.5	0.8776
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	9.4	0.8543
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	10.0	0.8737
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	12.1	0.8579
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	14.8	0.8452
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	15.5	0.8709

Compare expression of checked genes

Lus10040668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.