Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58740 216 / 2e-73 HSP20-like chaperones superfamily protein (.1) AT5G53400 68 / 3e-14 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones superfamily protein (.1) AT4G27890 62 / 2e-12 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018234 [exp] 263 / 9e-92 AT5G58740 266 / 8e-93 HSP20-like chaperones superfamily protein (.1) Lus10019028 [exp] 72 / 6e-16 AT5G53400 324 / 3e-111 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10005009 [exp] 72 / 1e-15 AT5G53400 306 / 2e-103 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10018250 [exp] 69 / 4e-15 AT5G53400 213 / 4e-69 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10040656 [exp] 68 / 8e-15 AT5G53400 216 / 3e-70 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10027048 [exp] 40 / 5e-05 AT4G27890 68 / 3e-15 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251204 [exp] 209 / 1e-70 AT5G58740 298 / 1e-105 HSP20-like chaperones superfamily protein (.1) Potri.009G046000 [exp] 82 / 2e-21 AT5G58740 97 / 2e-27 HSP20-like chaperones superfamily protein (.1) Potri.015G013900 [exp] 80 / 1e-18 AT5G53400 283 / 8e-95 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.012G014100 [exp] 77 / 1e-17 AT5G53400 277 / 4e-93 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.003G100900 [exp] 63 / 1e-12 AT5G53400 232 / 2e-75 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G132500 [exp] 61 / 6e-12 AT5G53400 225 / 1e-73 BOBBER1, HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10040670 pacid=23157770 polypeptide=Lus10040670 locus=Lus10040670.g ID=Lus10040670.BGIv1.0 annot-version=v1.0 ATGGCAGAGAAACTGGCTCCAGAGAAGCGCCACAGCTTCCTCCACAACGGTAAAAAGGTGTTCGAATGGGATCAAACCCTAGACGAGGTTAACTTGTACA TAGATAGACCGACGGGAATCCGTCCGCAGCAATTTCACTGCGTGATTGGGTCTAGTCATCTCACAATCGGCATCAAAGGCAGCCCTCCTTATCTCGATCA TGACCTAGCTCATCCAGTTAAGACTGACTGTTCTTTCTGGACCTTAGAGGATGATATAATGCACATTACGCTACAAAAGAGGGATAAGGGGCAGACGTGG CCTTCGCCCCTTAAGGGTGATGCTCAGCTGGATCCTCTCTCGGCTGATCTCGAGCAGAAACGTCTTATGCTCCAGAGATTTCAGGAAGAGGCAAGGCTCA AATGCTAG
AA sequence Show only first row Show all	>Lus10040670 pacid=23157770 polypeptide=Lus10040670 locus=Lus10040670.g ID=Lus10040670.BGIv1.0 annot-version=v1.0 MAEKLAPEKRHSFLHNGKKVFEWDQTLDEVNLYIDRPTGIRPQQFHCVIGSSHLTIGIKGSPPYLDHDLAHPVKTDCSFWTLEDDIMHITLQKRDKGQTW PSPLKGDAQLDPLSADLEQKRLMLQRFQEEARLKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58740			HSP20-like chaperones superfam...		Lus10040670 [exp]	0	1
AT5G35080			unknown protein		Lus10039972 [exp]	5.4	0.8596
AT5G06830			unknown protein		Lus10012023 [exp]	12.6	0.8568
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	15.1	0.8484
					Lus10009045 [exp]	18.3	0.8046
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	23.9	0.8396
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	24.1	0.8534
AT1G26580			unknown protein		Lus10026655 [exp]	24.5	0.8233
AT2G42780			unknown protein		Lus10031380 [exp]	25.8	0.8430
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	29.6	0.8396
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	30.1	0.8508

Compare expression of checked genes

Lus10040670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.