Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 416 / 1e-142 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 406 / 6e-139 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 349 / 9e-117 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 278 / 5e-89 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 271 / 1e-86 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 256 / 2e-80 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027791 [exp] 411 / 4e-141 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 394 / 6e-134 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 393 / 1e-133 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 390 / 7e-133 AT3G51860 579 / 0.0 cation exchanger 3 (.1) Lus10018231 [exp] 352 / 1e-118 AT3G51860 365 / 1e-123 cation exchanger 3 (.1) Lus10033396 [exp] 254 / 1e-78 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 255 / 5e-78 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 242 / 1e-74 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10006068 [exp] 227 / 4e-66 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251200 [exp] 488 / 4e-171 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.009G045800 [exp] 481 / 1e-168 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.016G115500 [exp] 430 / 2e-148 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 422 / 3e-145 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.001G469800 [exp] 264 / 1e-83 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 260 / 4e-82 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.010G249200 [exp] 257 / 4e-81 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10040674 pacid=23157570 polypeptide=Lus10040674 locus=Lus10040674.g ID=Lus10040674.BGIv1.0 annot-version=v1.0 ATGCAGAGCTCCAGTGTTGACCTGGAGGTCTCGATCCTCCTCGACTCTCCGGACAACGAAATCTTTCTTCAGCTCGACGCCGGCGGAAGTCGGAGTGATG TTAGTAACGGTAACGGTAACGGCTTGATCAAATCGTCATCGCTGGCCGAATGTAGTAACAGAAGGATCCAGAAGGGGAAGGGATTCCTGACGAATCTTAA GTTAGTGATTCTCGGCACCAAGCTCGCCGTCCTCTTCCCGGCCGTTCCGATCGCCATCCTCGCCGATATTTACGGATTCGGACGGCCATGGGTATTCGGT TGTAGCTTGCTTGGACTGGCCCCACTCGCTGAACGTGTCAGCTTCCTCACTGAACAAATTGCTTGCTTCACTGGTCCTACAGTTGGGGGGTTGCTGAATG CAACTTGCGGGAATGCAACGGAGCTGATAATAGCACTGTTTGCTCTCCACCAGAGGAAAATCCATGTCCTCAAGTACTCTCTGTTGGGTTCCATTCTCTC CAATCTGCTGCTTGTTCTTGGGAGCTCTCTTCTATGTGGAGGATTGGCTAACATCAAGAAGGAGCAGAGATATGACAGGAAGCAGGCTGATGTGAACTCG CTACTTCTGTTACTGGGCTTGTTGTGCCACATACTGCCACTAATGTTCAAGTATGCAATCGGACAAGGTCCAGTTGCTTCCTCCTCTACTCTTCAGCTGT CAAGAGTCAGTAGCATTTTCATGCTTGTGGCATACGCTGGATACATCATCTTTCAGCTGAAAACCCACAGGCAGCTCTTTGAGTCCCAGGAAGATGGGGA ATTGGAGGAGGAAGAAGAGAATGGGGCAGTGATTGGGTTCTGGAGTGCCTTCATTTGGTTGGTTGGCATGACGGTTTTCATAGCCTTGTTATCTGAATAT GTTGTGGGCACAATTGAGTCTGCTTCAGATTCTTGGGGGATTTCTATAAGCTTCATCAGCATAATTTTACTGCCGATTGTTGGGAATGCAGCAGAACATG CTGGATCCATCATATTTGCTTTCAAGAACAAACTGGACATTTCCCTGGGAGTTGCTCTGGGATCAGCCACTCAAATTTCAATGTTTGTGGTACCTTTTTG TGTATTAGTTGCATGGATTATGCACGTGGATATGGACCTGGATTTCAGCCTTCTTGAGACCGGCTGTCTAGCTTTCACTATTATCATCACAGCTTTCACG TTACAGGATGGGACCTCGCACTACATGAAAGGGGTGGTTCTTGTTCTATGCTACGTTGTTATCGCTGCGTGTTTTTTTGTTTACAAAGTTCCGCAAGGTG CAAACTTTTCCGGGCCGAAACCTCCTCAGATGTTTTGA
AA sequence Show only first row Show all	>Lus10040674 pacid=23157570 polypeptide=Lus10040674 locus=Lus10040674.g ID=Lus10040674.BGIv1.0 annot-version=v1.0 MQSSSVDLEVSILLDSPDNEIFLQLDAGGSRSDVSNGNGNGLIKSSSLAECSNRRIQKGKGFLTNLKLVILGTKLAVLFPAVPIAILADIYGFGRPWVFG CSLLGLAPLAERVSFLTEQIACFTGPTVGGLLNATCGNATELIIALFALHQRKIHVLKYSLLGSILSNLLLVLGSSLLCGGLANIKKEQRYDRKQADVNS LLLLLGLLCHILPLMFKYAIGQGPVASSSTLQLSRVSSIFMLVAYAGYIIFQLKTHRQLFESQEDGELEEEEENGAVIGFWSAFIWLVGMTVFIALLSEY VVGTIESASDSWGISISFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVALGSATQISMFVVPFCVLVAWIMHVDMDLDFSLLETGCLAFTIIITAFT LQDGTSHYMKGVVLVLCYVVIAACFFVYKVPQGANFSGPKPPQMF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10040674 [exp]	0	1
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	3.2	0.9402
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	9.2	0.9342
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	10.4	0.9390
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	12.0	0.9317
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	12.2	0.9335
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10033473 [exp]	14.7	0.9163
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	15.9	0.9230
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	16.1	0.9321
AT5G67640			unknown protein		Lus10011552 [exp]	17.5	0.9140
					Lus10031026 [exp]	17.7	0.9156

Compare expression of checked genes

Lus10040674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.